Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QEB entry

There is 1 chain in PDB entry 8QEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21PHE 1156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8QEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 65Right-handed alpha
Helix 2
AA2
A
66 69Right-handed 310
Helix 3
AA3
A
77 96Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
117 121Right-handed alpha
Helix 6
AA6
A
145 156Right-handed alpha
Helix 7
AA7
A
168 174Right-handed alpha
Helix 8
AA8
A
178 188Right-handed alpha
Helix 9
AA9
A
191 195Right-handed 310
Helix 10
AB1
A
207 211Right-handed 310
Helix 11
AB2
A
231 235Right-handed 310
Helix 12
AB3
A
257 279Right-handed alpha
Helix 13
AB4
A
318 337Right-handed alpha
Helix 14
AB5
A
337 358Right-handed alpha
Helix 15
AB6
A
365 371Right-handed alpha
Helix 16
AB7
A
375 389Right-handed alpha
Helix 17
AB8
A
408 423Right-handed alpha
Helix 18
AB9
A
433 438Right-handed alpha
Helix 19
AC1
A
451 459Right-handed 310
Helix 20
AC2
A
465 476Right-handed alpha
Helix 21
AC3
A
477 481Right-handed 310
Helix 22
AC4
A
489 494Right-handed alpha
Helix 23
AC5
A
516 532Right-handed alpha
Helix 24
AC6
A
544 552Right-handed alpha
Helix 25
AC7
A
553 556Right-handed 310
Helix 26
AC8
A
557 576Right-handed alpha
Helix 27
AC9
A
584 608Right-handed alpha
Helix 28
AD1
A
616 645Right-handed alpha
Helix 29
AD2
A
651 682Right-handed alpha
Helix 30
AD3
A
686 709Right-handed alpha
Helix 31
AD4
A
709 723Right-handed alpha
Helix 32
AD5
A
742 747Right-handed 310
Helix 33
AD6
A
748 766Right-handed alpha
Helix 34
AD7
A
767 770Right-handed 310
Helix 35
AD8
A
775 780Right-handed alpha
Helix 36
AD9
A
786 794Right-handed alpha
Helix 37
AE1
A
814 819Right-handed alpha
Helix 38
AE2
A
832 840Right-handed alpha
Helix 39
AE3
A
852 861Right-handed alpha
Helix 40
AE4
A
908 919Right-handed alpha
Helix 41
AE5
A
958 976Right-handed alpha
Helix 42
AE6
A
989 995Right-handed 310
Helix 43
AE7
A
996 1021Right-handed alpha
Helix 44
AE8
A
1022 1047Right-handed alpha
Helix 45
AE9
A
1052 1079Right-handed alpha
Helix 46
AF1
A
1087 1100Right-handed alpha
Helix 47
AF2
A
1100 1105Right-handed alpha
Helix 48
AF3
A
1106 1119Right-handed alpha
Helix 49
AF4
A
1123 1130Right-handed alpha
Helix 50
AF5
A
1136 1147Right-handed alpha
Helix 51
AF6
A
1147 1155Right-handed alpha
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There are 6 sheets in PDB entry 8QEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
40 42anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
199 203parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
255 256anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 395first strand
Strand 2
A
508 511anti-parallel
Strand 3
A
449 450anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
397 400anti-parallel
Strand 3
A
539 542anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 939first strand
Strand 2
A
944 947anti-parallel
Strand 3
A
804 808anti-parallel
Strand 4
A
980 984anti-parallel
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