Analysis of interatomic Contacts of Structural Units in PDB entry:
8QED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QED entry

There is 1 chain in PDB entry 8QED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21PHE 1156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8QED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 64Right-handed alpha
Helix 2
AA2
A
65 69Right-handed 310
Helix 3
AA3
A
77 96Right-handed alpha
Helix 4
AA4
A
98 115Right-handed alpha
Helix 5
AA5
A
117 121Right-handed alpha
Helix 6
AA6
A
147 156Right-handed alpha
Helix 7
AA7
A
168 173Right-handed alpha
Helix 8
AA8
A
178 188Right-handed alpha
Helix 9
AA9
A
231 235Right-handed 310
Helix 10
AB1
A
256 279Right-handed alpha
Helix 11
AB2
A
309 337Right-handed alpha
Helix 12
AB3
A
339 359Right-handed alpha
Helix 13
AB4
A
365 370Right-handed alpha
Helix 14
AB5
A
375 389Right-handed alpha
Helix 15
AB6
A
408 425Right-handed alpha
Helix 16
AB7
A
433 437Right-handed 310
Helix 17
AB8
A
451 457Right-handed 310
Helix 18
AB9
A
465 476Right-handed alpha
Helix 19
AC1
A
489 493Right-handed 310
Helix 20
AC2
A
515 531Right-handed alpha
Helix 21
AC3
A
546 553Right-handed alpha
Helix 22
AC4
A
558 576Right-handed alpha
Helix 23
AC5
A
584 609Right-handed alpha
Helix 24
AC6
A
614 630Right-handed alpha
Helix 25
AC7
A
630 646Right-handed alpha
Helix 26
AC8
A
651 663Right-handed alpha
Helix 27
AC9
A
663 682Right-handed alpha
Helix 28
AD1
A
686 710Right-handed alpha
Helix 29
AD2
A
710 723Right-handed alpha
Helix 30
AD3
A
744 747Right-handed 310
Helix 31
AD4
A
748 765Right-handed alpha
Helix 32
AD5
A
766 770Right-handed 310
Helix 33
AD6
A
775 780Right-handed alpha
Helix 34
AD7
A
784 797Right-handed alpha
Helix 35
AD8
A
814 819Right-handed alpha
Helix 36
AD9
A
832 841Right-handed alpha
Helix 37
AE1
A
852 861Right-handed alpha
Helix 38
AE2
A
893 897Right-handed 310
Helix 39
AE3
A
907 919Right-handed alpha
Helix 40
AE4
A
958 974Right-handed alpha
Helix 41
AE5
A
996 1021Right-handed alpha
Helix 42
AE6
A
1022 1048Right-handed alpha
Helix 43
AE7
A
1052 1079Right-handed alpha
Helix 44
AE8
A
1087 1099Right-handed alpha
Helix 45
AE9
A
1099 1106Right-handed alpha
Helix 46
AF1
A
1107 1117Right-handed alpha
Helix 47
AF2
A
1118 1120Right-handed 310
Helix 48
AF3
A
1123 1130Right-handed alpha
Helix 49
AF4
A
1130 1155Right-handed alpha
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There are 7 sheets in PDB entry 8QED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
38 40anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 129first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
199 203parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
166 167anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
504 511anti-parallel
Strand 3
A
449 450anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
504 511anti-parallel
Strand 3
A
397 400anti-parallel
Strand 4
A
539 542anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 939first strand
Strand 2
A
944 952anti-parallel
Strand 3
A
802 808anti-parallel
Strand 4
A
980 984anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
871 872first strand
Strand 2
A
888 889anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il