Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QEE entry

There is 1 chain in PDB entry 8QEE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 324PHE 1156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8QEE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
324 337Right-handed alpha
Helix 2
AA2
A
337 360Right-handed alpha
Helix 3
AA3
A
365 371Right-handed alpha
Helix 4
AA4
A
375 389Right-handed alpha
Helix 5
AA5
A
408 425Right-handed alpha
Helix 6
AA6
A
451 457Right-handed 310
Helix 7
AA7
A
465 476Right-handed alpha
Helix 8
AA8
A
477 481Right-handed 310
Helix 9
AA9
A
489 494Right-handed alpha
Helix 10
AB1
A
498 502Right-handed 310
Helix 11
AB2
A
515 531Right-handed alpha
Helix 12
AB3
A
546 553Right-handed alpha
Helix 13
AB4
A
557 576Right-handed alpha
Helix 14
AB5
A
584 609Right-handed alpha
Helix 15
AB6
A
614 620Right-handed alpha
Helix 16
AB7
A
620 630Right-handed alpha
Helix 17
AB8
A
630 646Right-handed alpha
Helix 18
AB9
A
651 682Right-handed alpha
Helix 19
AC1
A
686 722Right-handed alpha
Helix 20
AC2
A
738 745Right-handed alpha
Helix 21
AC3
A
748 767Right-handed alpha
Helix 22
AC4
A
768 770Right-handed 310
Helix 23
AC5
A
775 780Right-handed alpha
Helix 24
AC6
A
784 797Right-handed alpha
Helix 25
AC7
A
814 820Right-handed alpha
Helix 26
AC8
A
832 841Right-handed alpha
Helix 27
AC9
A
852 861Right-handed alpha
Helix 28
AD1
A
907 918Right-handed alpha
Helix 29
AD2
A
929 934Right-handed alpha
Helix 30
AD3
A
958 974Right-handed alpha
Helix 31
AD4
A
987 995Right-handed 310
Helix 32
AD5
A
996 1021Right-handed alpha
Helix 33
AD6
A
1022 1048Right-handed alpha
Helix 34
AD7
A
1052 1079Right-handed alpha
Helix 35
AD8
A
1087 1097Right-handed alpha
Helix 36
AD9
A
1099 1107Right-handed alpha
Helix 37
AE1
A
1107 1117Right-handed alpha
Helix 38
AE2
A
1118 1121Right-handed 310
Helix 39
AE3
A
1124 1129Right-handed alpha
Helix 40
AE4
A
1130 1147Right-handed alpha
Helix 41
AE5
A
1147 1155Right-handed alpha
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There are 3 sheets in PDB entry 8QEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 450first strand
Strand 2
A
504 511anti-parallel
Strand 3
A
393 400anti-parallel
Strand 4
A
539 543anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
937 939first strand
Strand 2
A
944 952anti-parallel
Strand 3
A
802 808anti-parallel
Strand 4
A
980 984anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 872first strand
Strand 2
A
888 890anti-parallel
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