Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QEK entry

There are 13 chains in PDB entry 8QEK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
p	SER 49	LEU 506
D	SER 49	LEU 506
Y	T 1	C 120
Z	G 1	A 120
A	ALA 2	ALA 140
M	ALA 2	LYS 278
G	ALA 2	ARG 141
S	GLU 2	TYR 256
b	LEU 17	LEU 302
c	LEU 17	LEU 302
B	ALA 2	ALA 587
I	ALA 2	ALA 587
O	ALA 2	ALA 587

There are107 helices in PDB entry 8QEK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	p	83	89	Right-handed alpha
Helix 2	AA2	p	90	92	Right-handed 310
Helix 3	AA3	p	94	110	Right-handed alpha
Helix 4	AA4	p	136	153	Right-handed alpha
Helix 5	AA5	p	163	179	Right-handed alpha
Helix 6	AA6	p	202	204	Right-handed 310
Helix 7	AA7	p	250	254	Right-handed 310
Helix 8	AA8	p	259	264	Right-handed alpha
Helix 9	AA9	p	264	284	Right-handed alpha
Helix 10	AB1	p	301	317	Right-handed alpha
Helix 11	AB2	p	347	363	Right-handed alpha
Helix 12	AB3	p	365	370	Right-handed 310
Helix 13	AB4	p	397	418	Right-handed alpha
Helix 14	AB5	p	419	423	Right-handed 310
Helix 15	AB6	p	437	452	Right-handed alpha
Helix 16	AB7	p	454	462	Right-handed alpha
Helix 17	AB8	p	475	506	Right-handed alpha
Helix 18	AB9	D	83	89	Right-handed alpha
Helix 19	AC1	D	90	92	Right-handed 310
Helix 20	AC2	D	94	110	Right-handed alpha
Helix 21	AC3	D	136	153	Right-handed alpha
Helix 22	AC4	D	163	179	Right-handed alpha
Helix 23	AC5	D	202	204	Right-handed 310
Helix 24	AC6	D	250	254	Right-handed 310
Helix 25	AC7	D	259	264	Right-handed alpha
Helix 26	AC8	D	264	284	Right-handed alpha
Helix 27	AC9	D	301	317	Right-handed alpha
Helix 28	AD1	D	347	363	Right-handed alpha
Helix 29	AD2	D	365	370	Right-handed 310
Helix 30	AD3	D	397	418	Right-handed alpha
Helix 31	AD4	D	419	423	Right-handed 310
Helix 32	AD5	D	437	452	Right-handed alpha
Helix 33	AD6	D	454	462	Right-handed alpha
Helix 34	AD7	D	475	506	Right-handed alpha
Helix 35	AD8	A	82	88	Right-handed 310
Helix 36	AD9	M	5	23	Right-handed alpha
Helix 37	AE1	M	24	32	Right-handed alpha
Helix 38	AE2	M	36	48	Right-handed alpha
Helix 39	AE3	M	86	88	Right-handed 310
Helix 40	AE4	M	135	139	Right-handed 310
Helix 41	AE5	M	154	158	Right-handed 310
Helix 42	AE6	M	194	213	Right-handed alpha
Helix 43	AE7	M	215	221	Right-handed alpha
Helix 44	AE8	G	11	13	Right-handed 310
Helix 45	AE9	G	82	88	Right-handed 310
Helix 46	AF1	S	43	55	Right-handed alpha
Helix 47	AF2	S	152	159	Right-handed alpha
Helix 48	AF3	S	180	182	Right-handed 310
Helix 49	AF4	S	195	198	Right-handed 310
Helix 50	AF5	b	35	39	Right-handed 310
Helix 51	AF6	b	41	46	Right-handed 310
Helix 52	AF7	b	48	56	Right-handed alpha
Helix 53	AF8	b	71	90	Right-handed alpha
Helix 54	AF9	b	107	112	Right-handed alpha
Helix 55	AG1	b	142	144	Right-handed 310
Helix 56	AG2	b	220	240	Right-handed alpha
Helix 57	AG3	b	273	295	Right-handed alpha
Helix 58	AG4	c	35	40	Right-handed alpha
Helix 59	AG5	c	41	46	Right-handed 310
Helix 60	AG6	c	48	55	Right-handed alpha
Helix 61	AG7	c	71	90	Right-handed alpha
Helix 62	AG8	c	107	112	Right-handed alpha
Helix 63	AG9	c	142	144	Right-handed 310
Helix 64	AH1	c	220	240	Right-handed alpha
Helix 65	AH2	c	273	295	Right-handed alpha
Helix 66	AH3	B	55	63	Right-handed alpha
Helix 67	AH4	B	66	78	Right-handed alpha
Helix 68	AH5	B	320	325	Right-handed alpha
Helix 69	AH6	B	326	330	Right-handed 310
Helix 70	AH7	B	341	357	Right-handed alpha
Helix 71	AH8	B	373	384	Right-handed alpha
Helix 72	AH9	B	409	424	Right-handed alpha
Helix 73	AI1	B	445	455	Right-handed alpha
Helix 74	AI2	B	485	490	Right-handed alpha
Helix 75	AI3	B	490	500	Right-handed alpha
Helix 76	AI4	B	513	517	Right-handed 310
Helix 77	AI5	B	521	540	Right-handed alpha
Helix 78	AI6	B	546	548	Right-handed 310
Helix 79	AI7	I	55	62	Right-handed alpha
Helix 80	AI8	I	66	78	Right-handed alpha
Helix 81	AI9	I	320	325	Right-handed alpha
Helix 82	AJ1	I	326	328	Right-handed 310
Helix 83	AJ2	I	341	359	Right-handed alpha
Helix 84	AJ3	I	373	384	Right-handed alpha
Helix 85	AJ4	I	409	424	Right-handed alpha
Helix 86	AJ5	I	445	455	Right-handed alpha
Helix 87	AJ6	I	485	490	Right-handed alpha
Helix 88	AJ7	I	490	513	Right-handed alpha
Helix 89	AJ8	I	520	539	Right-handed alpha
Helix 90	AJ9	I	546	550	Right-handed 310
Helix 91	AK1	O	55	63	Right-handed alpha
Helix 92	AK2	O	66	78	Right-handed alpha
Helix 93	AK3	O	113	118	Right-handed 310
Helix 94	AK4	O	197	201	Right-handed 310
Helix 95	AK5	O	202	211	Right-handed alpha
Helix 96	AK6	O	229	233	Right-handed 310
Helix 97	AK7	O	250	260	Right-handed alpha
Helix 98	AK8	O	320	325	Right-handed alpha
Helix 99	AK9	O	326	328	Right-handed 310
Helix 100	AL1	O	341	358	Right-handed alpha
Helix 101	AL2	O	373	384	Right-handed alpha
Helix 102	AL3	O	409	424	Right-handed alpha
Helix 103	AL4	O	445	455	Right-handed alpha
Helix 104	AL5	O	485	490	Right-handed alpha
Helix 105	AL6	O	490	513	Right-handed alpha
Helix 106	AL7	O	520	539	Right-handed alpha
Helix 107	AL8	O	546	550	Right-handed 310

There are 49 sheets in PDB entry 8QEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	123	128	first strand
Strand 2	p	426	431	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	182	187	first strand
Strand 2	p	195	201	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	206	208	first strand
Strand 2	p	223	227	anti-parallel
Strand 3	p	230	235	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	332	337	first strand
Strand 2	p	290	295	anti-parallel
Strand 3	D	325	328	parallel
Strand 4	b	299	302	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	128	first strand
Strand 2	D	426	431	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	187	first strand
Strand 2	D	195	201	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	208	first strand
Strand 2	D	223	227	anti-parallel
Strand 3	D	230	235	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	295	first strand
Strand 2	D	332	337	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	103	118	anti-parallel
Strand 5	A	126	132	anti-parallel
Strand 6	A	58	66	anti-parallel
Strand 7	A	27	35	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	15	19	anti-parallel
Strand 3	A	91	97	anti-parallel
Strand 4	A	103	118	anti-parallel
Strand 5	A	135	137	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	43	first strand
Strand 2	A	46	53	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	60	first strand
Strand 2	M	72	84	parallel
Strand 3	M	174	191	anti-parallel
Strand 4	M	90	94	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	57	60	first strand
Strand 2	M	72	84	parallel
Strand 3	M	174	191	anti-parallel
Strand 4	M	247	262	anti-parallel
Strand 5	M	223	229	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	123	129	first strand
Strand 2	M	161	171	anti-parallel
Strand 3	M	97	111	anti-parallel
Strand 4	M	114	118	anti-parallel
Strand 5	M	146	150	anti-parallel
Strand 6	M	141	143	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	132	133	first strand
Strand 2	B	550	555	anti-parallel
Strand 3	B	558	563	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	233	236	first strand
Strand 2	M	243	245	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	15	19	anti-parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	103	118	anti-parallel
Strand 5	G	126	132	anti-parallel
Strand 6	G	58	66	anti-parallel
Strand 7	G	27	35	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	15	19	anti-parallel
Strand 3	G	91	97	anti-parallel
Strand 4	G	103	118	anti-parallel
Strand 5	G	135	137	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	51	53	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	177	178	first strand
Strand 2	S	168	174	anti-parallel
Strand 3	S	200	219	anti-parallel
Strand 4	S	241	246	anti-parallel
Strand 5	S	119	123	anti-parallel
Strand 6	S	94	101	anti-parallel
Strand 7	S	56	61	anti-parallel
Strand 8	S	135	151	anti-parallel
Strand 9	S	200	219	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	63	65	first strand
Strand 2	S	88	90	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	107	110	first strand
Strand 2	S	113	116	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	160	161	first strand
Strand 2	S	190	193	anti-parallel
Strand 3	S	184	187	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	223	226	first strand
Strand 2	S	234	237	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	97	106	first strand
Strand 2	b	192	203	anti-parallel
Strand 3	b	123	133	anti-parallel
Strand 4	b	136	140	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	116	117	first strand
Strand 2	b	154	157	anti-parallel
Strand 3	b	146	149	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	250	255	first strand
Strand 2	b	258	264	anti-parallel
Strand 3	c	248	255	anti-parallel
Strand 4	c	258	263	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	97	106	first strand
Strand 2	c	192	203	anti-parallel
Strand 3	c	123	133	anti-parallel
Strand 4	c	136	140	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	116	117	first strand
Strand 2	c	154	157	anti-parallel
Strand 3	c	146	149	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	6	first strand
Strand 2	B	18	20	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	87	91	anti-parallel
Strand 3	B	36	40	parallel
Strand 4	B	334	337	parallel
Strand 5	B	363	367	parallel
Strand 6	B	389	392	parallel
Strand 7	B	457	458	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	396	399	anti-parallel
Strand 3	B	439	440	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	470	473	anti-parallel
Strand 3	B	460	463	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	580	first strand
Strand 2	I	558	565	parallel
Strand 3	I	551	555	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	21	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	53	first strand
Strand 2	I	87	91	anti-parallel
Strand 3	I	36	40	parallel
Strand 4	I	334	337	parallel
Strand 5	I	363	367	parallel
Strand 6	I	389	392	parallel
Strand 7	I	457	458	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	44	first strand
Strand 2	I	63	64	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	404	407	first strand
Strand 2	I	396	400	anti-parallel
Strand 3	I	439	440	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	434	435	first strand
Strand 2	I	470	473	anti-parallel
Strand 3	I	460	463	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	6	first strand
Strand 2	O	18	21	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	50	53	first strand
Strand 2	O	87	91	anti-parallel
Strand 3	O	36	40	parallel
Strand 4	O	334	337	parallel
Strand 5	O	363	367	parallel
Strand 6	O	389	392	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	95	96	first strand
Strand 2	O	312	313	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	99	102	first strand
Strand 2	O	105	109	anti-parallel
Strand 3	O	265	269	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	143	150	first strand
Strand 2	O	131	138	anti-parallel
Strand 3	O	120	126	anti-parallel
Strand 4	O	303	307	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	216	220	first strand
Strand 2	O	152	158	anti-parallel
Strand 3	O	246	249	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	165	171	first strand
Strand 2	O	178	185	anti-parallel
Strand 3	O	188	194	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	405	408	first strand
Strand 2	O	396	399	anti-parallel
Strand 3	O	439	440	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	434	435	first strand
Strand 2	O	470	473	anti-parallel
Strand 3	O	460	463	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	551	555	first strand
Strand 2	O	558	562	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QEK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEK