Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QEQ entry

There are 11 chains in PDB entry 8QEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 11	TYR 1482
B	GLU 16	VAL 1174
C	PRO 2	VAL 271
E	ASP 2	GLN 210
F	GLN 46	ASP 127
H	ALA 2	ALA 149
I	PRO 9	GLU 125
J	MET 1	LYS 67
K	MET 1	GLY 115
L	PRO 14	ARG 58
R	G 1	C 76

There are138 helices in PDB entry 8QEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	35	Right-handed alpha
Helix 2	AA2	A	99	108	Right-handed alpha
Helix 3	AA3	A	123	133	Right-handed alpha
Helix 4	AA4	A	136	149	Right-handed alpha
Helix 5	AA5	A	217	227	Right-handed alpha
Helix 6	AA6	A	239	244	Right-handed alpha
Helix 7	AA7	A	245	247	Right-handed 310
Helix 8	AA8	A	257	261	Right-handed 310
Helix 9	AA9	A	274	296	Right-handed alpha
Helix 10	AB1	A	299	319	Right-handed alpha
Helix 11	AB2	A	348	354	Right-handed alpha
Helix 12	AB3	A	382	388	Right-handed alpha
Helix 13	AB4	A	398	409	Right-handed alpha
Helix 14	AB5	A	434	438	Right-handed 310
Helix 15	AB6	A	465	467	Right-handed 310
Helix 16	AB7	A	488	493	Right-handed alpha
Helix 17	AB8	A	508	519	Right-handed alpha
Helix 18	AB9	A	520	525	Right-handed 310
Helix 19	AC1	A	539	549	Right-handed alpha
Helix 20	AC2	A	556	564	Right-handed alpha
Helix 21	AC3	A	588	596	Right-handed alpha
Helix 22	AC4	A	641	646	Right-handed alpha
Helix 23	AC5	A	651	661	Right-handed alpha
Helix 24	AC6	A	661	684	Right-handed alpha
Helix 25	AC7	A	688	693	Right-handed 310
Helix 26	AC8	A	695	722	Right-handed alpha
Helix 27	AC9	A	732	759	Right-handed alpha
Helix 28	AD1	A	764	773	Right-handed alpha
Helix 29	AD2	A	777	786	Right-handed alpha
Helix 30	AD3	A	832	855	Right-handed alpha
Helix 31	AD4	A	858	869	Right-handed alpha
Helix 32	AD5	A	890	894	Right-handed 310
Helix 33	AD6	A	912	921	Right-handed alpha
Helix 34	AD7	A	926	934	Right-handed alpha
Helix 35	AD8	A	935	944	Right-handed alpha
Helix 36	AD9	A	945	970	Right-handed alpha
Helix 37	AE1	A	982	994	Right-handed alpha
Helix 38	AE2	A	1005	1018	Right-handed alpha
Helix 39	AE3	A	1027	1038	Right-handed alpha
Helix 40	AE4	A	1038	1049	Right-handed alpha
Helix 41	AE5	A	1052	1057	Right-handed alpha
Helix 42	AE6	A	1061	1078	Right-handed alpha
Helix 43	AE7	A	1086	1097	Right-handed alpha
Helix 44	AE8	A	1098	1101	Right-handed 310
Helix 45	AE9	A	1119	1130	Right-handed alpha
Helix 46	AF1	A	1145	1149	Right-handed 310
Helix 47	AF2	A	1150	1162	Right-handed alpha
Helix 48	AF3	A	1165	1169	Right-handed alpha
Helix 49	AF4	A	1180	1184	Right-handed 310
Helix 50	AF5	A	1189	1194	Right-handed alpha
Helix 51	AF6	A	1194	1199	Right-handed alpha
Helix 52	AF7	A	1217	1225	Right-handed alpha
Helix 53	AF8	A	1227	1240	Right-handed alpha
Helix 54	AF9	A	1262	1267	Right-handed alpha
Helix 55	AG1	A	1280	1296	Right-handed alpha
Helix 56	AG2	A	1342	1349	Right-handed alpha
Helix 57	AG3	A	1361	1369	Right-handed alpha
Helix 58	AG4	A	1370	1388	Right-handed alpha
Helix 59	AG5	A	1394	1405	Right-handed alpha
Helix 60	AG6	A	1415	1420	Right-handed alpha
Helix 61	AG7	A	1425	1431	Right-handed alpha
Helix 62	AG8	A	1434	1445	Right-handed alpha
Helix 63	AG9	A	1453	1460	Right-handed alpha
Helix 64	AH1	A	1466	1470	Right-handed 310
Helix 65	AH2	A	1478	1482	Right-handed 310
Helix 66	AH3	B	21	37	Right-handed alpha
Helix 67	AH4	B	40	53	Right-handed alpha
Helix 68	AH5	B	53	62	Right-handed alpha
Helix 69	AH6	B	109	117	Right-handed alpha
Helix 70	AH7	B	167	174	Right-handed alpha
Helix 71	AH8	B	247	253	Right-handed alpha
Helix 72	AH9	B	269	276	Right-handed alpha
Helix 73	AI1	B	280	289	Right-handed alpha
Helix 74	AI2	B	294	308	Right-handed alpha
Helix 75	AI3	B	313	323	Right-handed alpha
Helix 76	AI4	B	331	346	Right-handed alpha
Helix 77	AI5	B	348	352	Right-handed 310
Helix 78	AI6	B	357	377	Right-handed alpha
Helix 79	AI7	B	387	389	Right-handed 310
Helix 80	AI8	B	395	424	Right-handed alpha
Helix 81	AI9	B	430	435	Right-handed alpha
Helix 82	AJ1	B	437	451	Right-handed alpha
Helix 83	AJ2	B	474	482	Right-handed alpha
Helix 84	AJ3	B	502	506	Right-handed 310
Helix 85	AJ4	B	516	520	Right-handed 310
Helix 86	AJ5	B	538	548	Right-handed alpha
Helix 87	AJ6	B	579	594	Right-handed alpha
Helix 88	AJ7	B	636	645	Right-handed alpha
Helix 89	AJ8	B	646	648	Right-handed 310
Helix 90	AJ9	B	652	659	Right-handed alpha
Helix 91	AK1	B	678	683	Right-handed 310
Helix 92	AK2	B	699	704	Right-handed 310
Helix 93	AK3	B	705	710	Right-handed alpha
Helix 94	AK4	B	713	717	Right-handed 310
Helix 95	AK5	B	718	729	Right-handed alpha
Helix 96	AK6	B	730	732	Right-handed 310
Helix 97	AK7	B	761	765	Right-handed 310
Helix 98	AK8	B	798	803	Right-handed alpha
Helix 99	AK9	B	969	972	Right-handed 310
Helix 100	AL1	B	977	994	Right-handed alpha
Helix 101	AL2	B	1007	1017	Right-handed alpha
Helix 102	AL3	B	1054	1059	Right-handed alpha
Helix 103	AL4	B	1077	1081	Right-handed 310
Helix 104	AL5	B	1087	1097	Right-handed alpha
Helix 105	AL6	B	1099	1107	Right-handed alpha
Helix 106	AL7	B	1152	1164	Right-handed alpha
Helix 107	AL8	C	27	41	Right-handed alpha
Helix 108	AL9	C	60	71	Right-handed alpha
Helix 109	AM1	C	118	120	Right-handed 310
Helix 110	AM2	C	129	133	Right-handed 310
Helix 111	AM3	C	173	177	Right-handed 310
Helix 112	AM4	C	199	203	Right-handed 310
Helix 113	AM5	C	240	271	Right-handed alpha
Helix 114	AM6	E	3	25	Right-handed alpha
Helix 115	AM7	E	29	35	Right-handed alpha
Helix 116	AM8	E	36	45	Right-handed alpha
Helix 117	AM9	E	55	59	Right-handed 310
Helix 118	AN1	E	83	98	Right-handed alpha
Helix 119	AN2	E	111	122	Right-handed alpha
Helix 120	AN3	E	133	135	Right-handed 310
Helix 121	AN4	E	138	142	Right-handed 310
Helix 122	AN5	E	152	164	Right-handed alpha
Helix 123	AN6	E	166	170	Right-handed 310
Helix 124	AN7	E	177	183	Right-handed alpha
Helix 125	AN8	F	58	75	Right-handed alpha
Helix 126	AN9	F	88	99	Right-handed alpha
Helix 127	AO1	F	121	123	Right-handed 310
Helix 128	AO2	H	83	88	Right-handed 310
Helix 129	AO3	H	129	133	Right-handed alpha
Helix 130	AO4	I	63	67	Right-handed 310
Helix 131	AO5	I	69	75	Right-handed 310
Helix 132	AO6	J	17	27	Right-handed alpha
Helix 133	AO7	J	30	38	Right-handed alpha
Helix 134	AO8	J	42	52	Right-handed alpha
Helix 135	AO9	J	55	60	Right-handed alpha
Helix 136	AP1	K	5	10	Right-handed 310
Helix 137	AP2	K	39	51	Right-handed alpha
Helix 138	AP3	K	82	114	Right-handed alpha

There are 43 sheets in PDB entry 8QEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1448	1449	first strand
Strand 2	A	20	22	anti-parallel
Strand 3	B	1170	1172	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	95	first strand
Strand 2	A	249	255	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	194	first strand
Strand 2	A	197	201	anti-parallel
Strand 3	A	214	215	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	B	1084	1086	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1060	1062	first strand
Strand 2	A	362	369	anti-parallel
Strand 3	A	500	504	anti-parallel
Strand 4	A	455	459	anti-parallel
Strand 5	A	469	477	anti-parallel
Strand 6	A	377	381	parallel
Strand 7	A	482	484	anti-parallel
Strand 8	A	362	369	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	393	first strand
Strand 2	A	445	449	anti-parallel
Strand 3	A	416	420	anti-parallel
Strand 4	A	426	428	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	555	first strand
Strand 2	A	586	587	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	H	90	101	anti-parallel
Strand 3	H	140	148	anti-parallel
Strand 4	H	55	61	anti-parallel
Strand 5	H	4	14	anti-parallel
Strand 6	H	25	32	anti-parallel
Strand 7	H	38	44	anti-parallel
Strand 8	H	121	128	anti-parallel
Strand 9	H	111	118	anti-parallel
Strand 10	H	90	101	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	605	first strand
Strand 2	A	627	631	anti-parallel
Strand 3	A	634	637	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	790	first strand
Strand 2	A	822	823	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	793	first strand
Strand 2	A	796	797	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	A	879	880	anti-parallel
Strand 3	A	886	888	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	902	905	first strand
Strand 2	A	976	979	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1306	1310	first strand
Strand 2	A	1335	1339	anti-parallel
Strand 3	A	1139	1142	anti-parallel
Strand 4	A	1358	1359	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1243	1247	first strand
Strand 2	A	1256	1261	anti-parallel
Strand 3	A	1210	1216	anti-parallel
Strand 4	A	1170	1177	anti-parallel
Strand 5	I	52	57	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1319	1322	first strand
Strand 2	A	1328	1331	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1472	1475	first strand
Strand 2	F	104	109	anti-parallel
Strand 3	F	115	119	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	83	93	anti-parallel
Strand 3	B	121	133	anti-parallel
Strand 4	B	140	153	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	105	107	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	187	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	468	469	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	394	first strand
Strand 2	B	196	200	anti-parallel
Strand 3	B	484	486	parallel
Strand 4	B	524	525	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	208	first strand
Strand 2	B	215	223	anti-parallel
Strand 3	B	233	240	anti-parallel
Strand 4	B	256	259	anti-parallel
Strand 5	B	267	268	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	621	629	anti-parallel
Strand 3	B	662	666	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	632	633	first strand
Strand 2	B	621	629	anti-parallel
Strand 3	B	695	696	anti-parallel
Strand 4	B	675	676	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	552	first strand
Strand 2	B	572	577	anti-parallel
Strand 3	B	565	569	anti-parallel
Strand 4	B	611	615	parallel
Strand 5	B	602	606	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	751	first strand
Strand 2	B	808	817	anti-parallel
Strand 3	B	917	927	anti-parallel
Strand 4	B	901	911	anti-parallel
Strand 5	B	859	861	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	747	751	first strand
Strand 2	B	808	817	anti-parallel
Strand 3	B	917	927	anti-parallel
Strand 4	B	901	911	anti-parallel
Strand 5	L	44	45	anti-parallel
Strand 6	L	15	19	anti-parallel
Strand 7	L	25	28	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	759	760	first strand
Strand 2	B	997	998	parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1025	1026	first strand
Strand 2	B	1041	1050	anti-parallel
Strand 3	B	934	936	anti-parallel
Strand 4	B	943	949	anti-parallel
Strand 5	B	794	797	parallel
Strand 6	B	965	967	anti-parallel
Strand 7	B	776	782	parallel
Strand 8	B	1041	1050	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	821	first strand
Strand 2	B	825	829	anti-parallel
Strand 3	B	869	872	anti-parallel
Strand 4	B	889	891	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	865	867	first strand
Strand 2	B	894	895	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	956	957	first strand
Strand 2	B	1028	1029	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1115	1119	first strand
Strand 2	B	1146	1150	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1127	1128	first strand
Strand 2	B	1135	1136	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	14	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	228	235	anti-parallel
Strand 4	C	179	186	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	122	first strand
Strand 2	C	99	106	anti-parallel
Strand 3	C	158	169	anti-parallel
Strand 4	C	43	55	anti-parallel
Strand 5	L	54	56	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	116	first strand
Strand 2	C	149	153	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	71	75	anti-parallel
Strand 3	E	101	106	parallel
Strand 4	E	126	131	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	82	first strand
Strand 2	E	109	110	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	150	first strand
Strand 2	E	190	197	anti-parallel
Strand 3	E	201	210	anti-parallel
Strand 4	E	172	174	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	28	first strand
Strand 2	I	35	38	anti-parallel
Strand 3	I	45	47	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	81	first strand
Strand 2	I	94	97	anti-parallel
Strand 3	I	111	114	anti-parallel
Strand 4	I	122	124	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEQ