Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QEV entry

There are 3 chains in PDB entry 8QEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 72PHE 375
B
 LEU 72PHE 375
C
 LEU 72PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8QEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
82 102Right-handed alpha
Helix 3
AA3
A
124 137Right-handed alpha
Helix 4
AA4
A
156 168Right-handed alpha
Helix 5
AA5
A
177 188Right-handed alpha
Helix 6
AA6
A
201 216Right-handed alpha
Helix 7
AA7
A
231 242Right-handed alpha
Helix 8
AA8
A
259 270Right-handed alpha
Helix 9
AA9
A
279 284Right-handed alpha
Helix 10
AB1
A
305 311Right-handed alpha
Helix 11
AB2
A
317 325Right-handed alpha
Helix 12
AB3
A
343 349Right-handed alpha
Helix 13
AB4
A
353 373Right-handed alpha
Helix 14
AB5
B
77 81Right-handed 310
Helix 15
AB6
B
82 102Right-handed alpha
Helix 16
AB7
B
124 137Right-handed alpha
Helix 17
AB8
B
156 165Right-handed alpha
Helix 18
AB9
B
177 188Right-handed alpha
Helix 19
AC1
B
201 216Right-handed alpha
Helix 20
AC2
B
231 242Right-handed alpha
Helix 21
AC3
B
259 269Right-handed alpha
Helix 22
AC4
B
279 284Right-handed alpha
Helix 23
AC5
B
304 311Right-handed alpha
Helix 24
AC6
B
317 325Right-handed alpha
Helix 25
AC7
B
343 348Right-handed alpha
Helix 26
AC8
B
353 373Right-handed alpha
Helix 27
AC9
C
77 81Right-handed 310
Helix 28
AD1
C
82 102Right-handed alpha
Helix 29
AD2
C
124 137Right-handed alpha
Helix 30
AD3
C
156 168Right-handed alpha
Helix 31
AD4
C
177 188Right-handed alpha
Helix 32
AD5
C
201 217Right-handed alpha
Helix 33
AD6
C
231 242Right-handed alpha
Helix 34
AD7
C
259 270Right-handed alpha
Helix 35
AD8
C
279 284Right-handed alpha
Helix 36
AD9
C
305 311Right-handed alpha
Helix 37
AE1
C
317 325Right-handed alpha
Helix 38
AE2
C
343 349Right-handed alpha
Helix 39
AE3
C
353 373Right-handed alpha
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There are 6 sheets in PDB entry 8QEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 144first strand
Strand 2
A
114 119parallel
Strand 3
A
170 174parallel
Strand 4
A
192 194parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 277first strand
Strand 2
A
247 251parallel
Strand 3
A
223 227parallel
Strand 4
A
289 292parallel
Strand 5
A
329 332parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 144first strand
Strand 2
B
114 119parallel
Strand 3
B
170 174parallel
Strand 4
B
192 194parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 277first strand
Strand 2
B
247 251parallel
Strand 3
B
223 227parallel
Strand 4
B
289 292parallel
Strand 5
B
329 332parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 144first strand
Strand 2
C
114 119parallel
Strand 3
C
170 174parallel
Strand 4
C
192 194parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 277first strand
Strand 2
C
247 251parallel
Strand 3
C
223 227parallel
Strand 4
C
289 292parallel
Strand 5
C
329 332parallel
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