Analysis of interatomic Contacts of Structural Units in PDB entry:
8QEY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QEY entry

There are 2 chains in PDB entry 8QEY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 41GLU 489
B
 THR 61ALA 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8QEY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
56 69Right-handed alpha
Helix 3
AA3
A
74 99Right-handed alpha
Helix 4
AA4
A
106 113Right-handed alpha
Helix 5
AA5
A
114 130Right-handed alpha
Helix 6
AA6
A
131 148Right-handed alpha
Helix 7
AA7
A
157 177Right-handed alpha
Helix 8
AA8
A
182 210Right-handed alpha
Helix 9
AA9
A
218 222Right-handed 310
Helix 10
AB1
A
230 245Right-handed alpha
Helix 11
AB2
A
251 257Right-handed alpha
Helix 12
AB3
A
266 271Right-handed alpha
Helix 13
AB4
A
272 290Right-handed alpha
Helix 14
AB5
A
292 298Right-handed alpha
Helix 15
AB6
A
304 310Right-handed alpha
Helix 16
AB7
A
313 348Right-handed alpha
Helix 17
AB8
A
364 381Right-handed alpha
Helix 18
AB9
A
384 413Right-handed alpha
Helix 19
AC1
A
425 442Right-handed alpha
Helix 20
AC2
A
445 458Right-handed alpha
Helix 21
AC3
A
458 469Right-handed alpha
Helix 22
AC4
A
474 479Right-handed alpha
Helix 23
AC5
A
482 487Right-handed alpha
Helix 24
AC6
B
65 73Right-handed alpha
Helix 25
AC7
B
74 105Right-handed alpha
Helix 26
AC8
B
128 134Right-handed alpha
Helix 27
AC9
B
139 145Right-handed 310
Helix 28
AD1
B
146 153Right-handed alpha
Helix 29
AD2
B
185 199Right-handed alpha
Helix 30
AD3
B
221 240Right-handed alpha
Helix 31
AD4
B
254 270Right-handed alpha
Helix 32
AD5
B
283 291Right-handed alpha
Helix 33
AD6
B
310 326Right-handed alpha
Helix 34
AD7
B
348 357Right-handed alpha
Helix 35
AD8
B
407 414Right-handed alpha
Helix 36
AD9
B
417 432Right-handed alpha
Helix 37
AE1
B
433 438Right-handed alpha
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There are 4 sheets in PDB entry 8QEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 125first strand
Strand 2
B
362 366parallel
Strand 3
B
331 332parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
175 179anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 206first strand
Strand 2
B
244 246parallel
Strand 3
B
276 278parallel
Strand 4
B
298 300parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 442first strand
Strand 2
B
449 454anti-parallel
Strand 3
B
461 467anti-parallel
Strand 4
B
520 525anti-parallel
Strand 5
B
491 497anti-parallel
Strand 6
B
507 509anti-parallel
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