Analysis of interatomic Contacts of Structural Units in PDB entry:
8QF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QF0 entry

There are 2 chains in PDB entry 8QF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 28THR 537
B
 ILE 30THR 537
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8QF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 34Right-handed 310
Helix 2
AA2
A
35 39Right-handed 310
Helix 3
AA3
A
43 67Right-handed alpha
Helix 4
AA4
A
73 89Right-handed alpha
Helix 5
AA5
A
136 154Right-handed alpha
Helix 6
AA6
A
168 172Right-handed 310
Helix 7
AA7
A
173 191Right-handed alpha
Helix 8
AA8
A
208 222Right-handed alpha
Helix 9
AA9
A
229 234Right-handed 310
Helix 10
AB1
A
238 242Right-handed 310
Helix 11
AB2
A
249 264Right-handed alpha
Helix 12
AB3
A
265 272Right-handed alpha
Helix 13
AB4
A
289 301Right-handed alpha
Helix 14
AB5
A
302 304Right-handed 310
Helix 15
AB6
A
323 335Right-handed alpha
Helix 16
AB7
A
348 355Right-handed 310
Helix 17
AB8
A
373 377Right-handed 310
Helix 18
AB9
A
391 402Right-handed alpha
Helix 19
AC1
A
408 413Right-handed alpha
Helix 20
AC2
A
414 430Right-handed alpha
Helix 21
AC3
A
437 461Right-handed alpha
Helix 22
AC4
A
469 478Right-handed alpha
Helix 23
AC5
A
480 507Right-handed alpha
Helix 24
AC6
A
512 533Right-handed alpha
Helix 25
AC7
B
30 34Right-handed 310
Helix 26
AC8
B
35 39Right-handed 310
Helix 27
AC9
B
43 67Right-handed alpha
Helix 28
AD1
B
73 89Right-handed alpha
Helix 29
AD2
B
136 154Right-handed alpha
Helix 30
AD3
B
168 172Right-handed 310
Helix 31
AD4
B
173 191Right-handed alpha
Helix 32
AD5
B
208 222Right-handed alpha
Helix 33
AD6
B
229 234Right-handed 310
Helix 34
AD7
B
238 242Right-handed 310
Helix 35
AD8
B
249 264Right-handed alpha
Helix 36
AD9
B
265 272Right-handed alpha
Helix 37
AE1
B
289 301Right-handed alpha
Helix 38
AE2
B
323 335Right-handed alpha
Helix 39
AE3
B
348 355Right-handed 310
Helix 40
AE4
B
373 377Right-handed 310
Helix 41
AE5
B
391 402Right-handed alpha
Helix 42
AE6
B
408 413Right-handed alpha
Helix 43
AE7
B
414 430Right-handed alpha
Helix 44
AE8
B
437 461Right-handed alpha
Helix 45
AE9
B
469 479Right-handed alpha
Helix 46
AF1
B
480 507Right-handed alpha
Helix 47
AF2
B
512 533Right-handed alpha
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There are 4 sheets in PDB entry 8QF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 131first strand
Strand 2
A
159 165parallel
Strand 3
A
108 117anti-parallel
Strand 4
A
93 102anti-parallel
Strand 5
B
93 102anti-parallel
Strand 6
B
108 117anti-parallel
Strand 7
B
159 165anti-parallel
Strand 8
B
129 131parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
125 126parallel
Strand 3
A
159 165parallel
Strand 4
A
108 117anti-parallel
Strand 5
A
93 102anti-parallel
Strand 6
B
93 102anti-parallel
Strand 7
B
108 117anti-parallel
Strand 8
B
159 165anti-parallel
Strand 9
B
125 126parallel
Strand 10
B
199 200parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
315 317anti-parallel
Strand 3
A
305 310anti-parallel
Strand 4
A
282 286parallel
Strand 5
A
359 362parallel
Strand 6
A
381 383parallel
Strand 7
A
405 407parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 345first strand
Strand 2
B
315 317anti-parallel
Strand 3
B
305 310anti-parallel
Strand 4
B
282 286parallel
Strand 5
B
359 362parallel
Strand 6
B
381 383parallel
Strand 7
B
405 407parallel
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