Analysis of interatomic Contacts of Structural Units in PDB entry:
8QF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QF3 entry

There are 2 chains in PDB entry 8QF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 SER 2SER 127
A
 SER 2SER 127
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8QF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
30 34Right-handed 310
Helix 2
AA2
E
76 78Right-handed 310
Helix 3
AA3
E
89 93Right-handed 310
Helix 4
AA4
E
111 115Right-handed 310
Helix 5
AA5
A
30 34Right-handed 310
Helix 6
AA6
A
76 78Right-handed 310
Helix 7
AA7
A
89 93Right-handed 310
Helix 8
AA8
A
111 115Right-handed 310
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There are 4 sheets in PDB entry 8QF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 9first strand
Strand 2
E
20 28anti-parallel
Strand 3
E
80 85anti-parallel
Strand 4
E
70 75anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 15first strand
Strand 2
E
122 127parallel
Strand 3
E
94 101anti-parallel
Strand 4
E
35 41anti-parallel
Strand 5
E
48 53anti-parallel
Strand 6
E
59 62anti-parallel
Strand 7
A
59 62anti-parallel
Strand 8
A
48 53anti-parallel
Strand 9
A
35 41anti-parallel
Strand 10
A
94 101anti-parallel
Strand 11
A
122 127anti-parallel
Strand 12
A
13 15parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
117 118first strand
Strand 2
E
94 101anti-parallel
Strand 3
E
35 41anti-parallel
Strand 4
E
48 53anti-parallel
Strand 5
E
59 62anti-parallel
Strand 6
A
59 62anti-parallel
Strand 7
A
48 53anti-parallel
Strand 8
A
35 41anti-parallel
Strand 9
A
94 101anti-parallel
Strand 10
A
117 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
80 85anti-parallel
Strand 4
A
70 75anti-parallel
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