Analysis of interatomic Contacts of Structural Units in PDB entry:
8QF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QF5 entry

There are 4 chains in PDB entry 8QF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
G
 GLY 1SER 120
H
 GLY 208GLY 277
A
 VAL 4SER 120
B
 GLY 206GLY 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8QF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
G
27 32Right-handed alpha
Helix 2
AA2
G
88 92Right-handed 310
Helix 3
AA3
H
216 232Right-handed alpha
Helix 4
AA4
H
234 242Right-handed alpha
Helix 5
AA5
H
243 246Right-handed 310
Helix 6
AA6
H
247 258Right-handed alpha
Helix 7
AA7
H
259 261Right-handed 310
Helix 8
AA8
H
263 277Right-handed alpha
Helix 9
AA9
A
27 32Right-handed alpha
Helix 10
AB1
A
63 66Right-handed 310
Helix 11
AB2
A
88 92Right-handed 310
Helix 12
AB3
B
216 232Right-handed alpha
Helix 13
AB4
B
234 240Right-handed alpha
Helix 14
AB5
B
241 247Right-handed 310
Helix 15
AB6
B
248 258Right-handed alpha
Helix 16
AB7
B
259 261Right-handed 310
Helix 17
AB8
B
263 276Right-handed alpha
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There are 6 sheets in PDB entry 8QF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
6 9first strand
Strand 2
G
20 26anti-parallel
Strand 3
G
79 84anti-parallel
Strand 4
G
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
13 15first strand
Strand 2
G
114 119parallel
Strand 3
G
93 99anti-parallel
Strand 4
G
36 41anti-parallel
Strand 5
G
48 53anti-parallel
Strand 6
G
59 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
103 106first strand
Strand 2
H
211 214parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
20 26anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
69 74anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
114 119parallel
Strand 3
A
93 99anti-parallel
Strand 4
A
36 41anti-parallel
Strand 5
A
48 53anti-parallel
Strand 6
A
59 61anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
B
211 214parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il