Analysis of interatomic Contacts of Structural Units in PDB entry:
8QF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QF8 entry

There is 1 chain in PDB entry 8QF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 22	ARG 668

There are 57 helices in PDB entry 8QF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	31	Right-handed 310
Helix 2	AA2	A	38	54	Right-handed alpha
Helix 3	AA3	A	55	67	Right-handed alpha
Helix 4	AA4	A	77	81	Right-handed 310
Helix 5	AA5	A	86	104	Right-handed alpha
Helix 6	AA6	A	105	127	Right-handed alpha
Helix 7	AA7	A	136	147	Right-handed alpha
Helix 8	AA8	A	161	179	Right-handed alpha
Helix 9	AA9	A	182	201	Right-handed alpha
Helix 10	AB1	A	204	212	Right-handed alpha
Helix 11	AB2	A	218	231	Right-handed alpha
Helix 12	AB3	A	233	242	Right-handed alpha
Helix 13	AB4	A	244	253	Right-handed alpha
Helix 14	AB5	A	262	280	Right-handed alpha
Helix 15	AB6	A	288	307	Right-handed alpha
Helix 16	AB7	A	326	332	Right-handed alpha
Helix 17	AB8	A	337	354	Right-handed alpha
Helix 18	AB9	A	354	359	Right-handed alpha
Helix 19	AC1	A	366	379	Right-handed alpha
Helix 20	AC2	A	380	384	Right-handed 310
Helix 21	AC3	A	413	423	Right-handed alpha
Helix 22	AC4	A	424	429	Right-handed 310
Helix 23	AC5	A	451	454	Right-handed 310
Helix 24	AC6	A	588	592	Right-handed 310
Helix 25	AC7	A	598	605	Right-handed alpha
Helix 26	AC8	A	637	639	Right-handed 310
Helix 27	AC9	A	655	676	Right-handed alpha
Helix 28	AD1	A	685	692	Right-handed alpha
Helix 29	AD2	B	29	31	Right-handed 310
Helix 30	AD3	B	38	54	Right-handed alpha
Helix 31	AD4	B	55	67	Right-handed alpha
Helix 32	AD5	B	77	81	Right-handed 310
Helix 33	AD6	B	86	104	Right-handed alpha
Helix 34	AD7	B	105	127	Right-handed alpha
Helix 35	AD8	B	136	147	Right-handed alpha
Helix 36	AD9	B	161	179	Right-handed alpha
Helix 37	AE1	B	182	201	Right-handed alpha
Helix 38	AE2	B	204	212	Right-handed alpha
Helix 39	AE3	B	218	231	Right-handed alpha
Helix 40	AE4	B	233	242	Right-handed alpha
Helix 41	AE5	B	244	253	Right-handed alpha
Helix 42	AE6	B	262	280	Right-handed alpha
Helix 43	AE7	B	288	307	Right-handed alpha
Helix 44	AE8	B	326	332	Right-handed alpha
Helix 45	AE9	B	337	354	Right-handed alpha
Helix 46	AF1	B	354	359	Right-handed alpha
Helix 47	AF2	B	366	379	Right-handed alpha
Helix 48	AF3	B	380	384	Right-handed 310
Helix 49	AF4	B	413	423	Right-handed alpha
Helix 50	AF5	B	424	429	Right-handed 310
Helix 51	AF6	B	451	454	Right-handed 310
Helix 52	AF7	B	588	592	Right-handed 310
Helix 53	AF8	B	598	605	Right-handed alpha
Helix 54	AF9	B	637	639	Right-handed 310
Helix 55	AG1	B	655	665	Right-handed alpha
Helix 56	AG2	B	665	676	Right-handed alpha
Helix 57	AG3	B	685	692	Right-handed alpha

There are 14 sheets in PDB entry 8QF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	446	450	anti-parallel
Strand 3	A	455	461	anti-parallel
Strand 4	A	468	475	anti-parallel
Strand 5	A	529	533	anti-parallel
Strand 6	A	498	501	anti-parallel
Strand 7	A	504	507	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	155	156	anti-parallel
Strand 3	A	159	160	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	434	first strand
Strand 2	A	437	440	anti-parallel
Strand 3	A	480	487	parallel
Strand 4	A	516	523	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	549	554	anti-parallel
Strand 3	A	557	564	anti-parallel
Strand 4	A	647	651	first strand
Strand 5	A	594	596	parallel
Strand 6	A	621	623	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	608	first strand
Strand 2	A	616	618	anti-parallel
Strand 3	A	631	635	anti-parallel
Strand 4	A	557	564	anti-parallel
Strand 5	A	549	554	anti-parallel
Strand 6	A	643	645	first strand

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	677	681	first strand
Strand 2	A	797	801	anti-parallel
Strand 3	A	726	734	anti-parallel
Strand 4	A	764	775	anti-parallel
Strand 5	A	755	756	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	704	first strand
Strand 2	A	707	722	anti-parallel
Strand 3	A	778	786	anti-parallel
Strand 4	A	741	745	anti-parallel
Strand 5	A	748	749	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	35	first strand
Strand 2	B	446	450	anti-parallel
Strand 3	B	455	461	anti-parallel
Strand 4	B	468	475	anti-parallel
Strand 5	B	529	533	anti-parallel
Strand 6	B	499	501	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	152	first strand
Strand 2	B	155	156	anti-parallel
Strand 3	B	159	160	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	434	first strand
Strand 2	B	437	440	anti-parallel
Strand 3	B	480	487	parallel
Strand 4	B	516	523	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	549	554	anti-parallel
Strand 3	B	557	564	anti-parallel
Strand 4	B	647	651	first strand
Strand 5	B	594	596	parallel
Strand 6	B	622	623	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	606	608	first strand
Strand 2	B	616	618	anti-parallel
Strand 3	B	631	635	anti-parallel
Strand 4	B	557	564	anti-parallel
Strand 5	B	549	554	anti-parallel
Strand 6	B	643	645	first strand

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	677	681	first strand
Strand 2	B	797	801	anti-parallel
Strand 3	B	726	734	anti-parallel
Strand 4	B	764	775	anti-parallel
Strand 5	B	755	756	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	704	first strand
Strand 2	B	707	722	anti-parallel
Strand 3	B	778	786	anti-parallel
Strand 4	B	741	745	anti-parallel
Strand 5	B	748	749	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QF8