Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QFB entry

There are 3 chains in PDB entry 8QFB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 567	GLN 860
A	ASP 563	GLN 860
C	SER 567	LEU 653

There are 88 helices in PDB entry 8QFB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	568	576	Right-handed alpha
Helix 2	AA2	B	578	588	Right-handed alpha
Helix 3	AA3	B	603	611	Right-handed alpha
Helix 4	AA4	B	613	622	Right-handed alpha
Helix 5	AA5	B	636	644	Right-handed alpha
Helix 6	AA6	B	646	656	Right-handed alpha
Helix 7	AA7	B	669	678	Right-handed alpha
Helix 8	AA8	B	679	689	Right-handed alpha
Helix 9	AA9	B	702	710	Right-handed alpha
Helix 10	AB1	B	712	739	Right-handed alpha
Helix 11	AB2	B	757	759	Right-handed 310
Helix 12	AB3	A	566	577	Right-handed alpha
Helix 13	AB4	A	578	588	Right-handed alpha
Helix 14	AB5	A	603	611	Right-handed alpha
Helix 15	AB6	A	613	622	Right-handed alpha
Helix 16	AB7	A	636	644	Right-handed alpha
Helix 17	AB8	A	646	656	Right-handed alpha
Helix 18	AB9	A	669	678	Right-handed alpha
Helix 19	AC1	A	679	689	Right-handed alpha
Helix 20	AC2	A	702	710	Right-handed alpha
Helix 21	AC3	A	712	738	Right-handed alpha
Helix 22	AC4	A	757	759	Right-handed 310
Helix 23	AC5	C	568	576	Right-handed alpha
Helix 24	AC6	C	578	588	Right-handed alpha
Helix 25	AC7	C	603	611	Right-handed alpha
Helix 26	AC8	C	613	622	Right-handed alpha
Helix 27	AC9	C	636	644	Right-handed alpha
Helix 28	AD1	C	646	656	Right-handed alpha
Helix 29	AD2	C	669	677	Right-handed alpha
Helix 30	AD3	C	679	689	Right-handed alpha
Helix 31	AD4	C	702	710	Right-handed alpha
Helix 32	AD5	C	712	738	Right-handed alpha
Helix 33	AD6	C	757	759	Right-handed 310
Helix 34	AD7	D	566	577	Right-handed alpha
Helix 35	AD8	D	578	588	Right-handed alpha
Helix 36	AD9	D	603	611	Right-handed alpha
Helix 37	AE1	D	613	622	Right-handed alpha
Helix 38	AE2	D	636	644	Right-handed alpha
Helix 39	AE3	D	646	656	Right-handed alpha
Helix 40	AE4	D	669	678	Right-handed alpha
Helix 41	AE5	D	679	689	Right-handed alpha
Helix 42	AE6	D	702	710	Right-handed alpha
Helix 43	AE7	D	712	738	Right-handed alpha
Helix 44	AE8	D	757	759	Right-handed 310
Helix 45	AE9	E	567	577	Right-handed alpha
Helix 46	AF1	E	578	588	Right-handed alpha
Helix 47	AF2	E	603	611	Right-handed alpha
Helix 48	AF3	E	613	622	Right-handed alpha
Helix 49	AF4	E	636	644	Right-handed alpha
Helix 50	AF5	E	646	656	Right-handed alpha
Helix 51	AF6	E	669	678	Right-handed alpha
Helix 52	AF7	E	679	689	Right-handed alpha
Helix 53	AF8	E	702	710	Right-handed alpha
Helix 54	AF9	E	712	738	Right-handed alpha
Helix 55	AG1	E	757	759	Right-handed 310
Helix 56	AG2	F	568	576	Right-handed alpha
Helix 57	AG3	F	578	588	Right-handed alpha
Helix 58	AG4	F	603	611	Right-handed alpha
Helix 59	AG5	F	613	622	Right-handed alpha
Helix 60	AG6	F	636	644	Right-handed alpha
Helix 61	AG7	F	646	656	Right-handed alpha
Helix 62	AG8	F	669	678	Right-handed alpha
Helix 63	AG9	F	679	689	Right-handed alpha
Helix 64	AH1	F	702	710	Right-handed alpha
Helix 65	AH2	F	712	738	Right-handed alpha
Helix 66	AH3	F	757	759	Right-handed 310
Helix 67	AH4	G	567	577	Right-handed alpha
Helix 68	AH5	G	578	588	Right-handed alpha
Helix 69	AH6	G	603	611	Right-handed alpha
Helix 70	AH7	G	613	622	Right-handed alpha
Helix 71	AH8	G	636	644	Right-handed alpha
Helix 72	AH9	G	646	656	Right-handed alpha
Helix 73	AI1	G	669	678	Right-handed alpha
Helix 74	AI2	G	679	689	Right-handed alpha
Helix 75	AI3	G	702	710	Right-handed alpha
Helix 76	AI4	G	712	738	Right-handed alpha
Helix 77	AI5	G	757	759	Right-handed 310
Helix 78	AI6	H	567	577	Right-handed alpha
Helix 79	AI7	H	578	588	Right-handed alpha
Helix 80	AI8	H	603	611	Right-handed alpha
Helix 81	AI9	H	613	622	Right-handed alpha
Helix 82	AJ1	H	636	644	Right-handed alpha
Helix 83	AJ2	H	646	656	Right-handed alpha
Helix 84	AJ3	H	669	678	Right-handed alpha
Helix 85	AJ4	H	679	689	Right-handed alpha
Helix 86	AJ5	H	702	710	Right-handed alpha
Helix 87	AJ6	H	712	738	Right-handed alpha
Helix 88	AJ7	H	757	759	Right-handed 310

There are 24 sheets in PDB entry 8QFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	747	first strand
Strand 2	B	849	859	anti-parallel
Strand 3	B	778	790	anti-parallel
Strand 4	B	793	797	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	755	first strand
Strand 2	B	849	859	anti-parallel
Strand 3	B	778	790	anti-parallel
Strand 4	B	824	826	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	768	first strand
Strand 2	B	832	840	anti-parallel
Strand 3	B	804	809	anti-parallel
Strand 4	B	812	814	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	747	first strand
Strand 2	A	849	859	anti-parallel
Strand 3	A	778	789	anti-parallel
Strand 4	A	794	797	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	755	first strand
Strand 2	A	849	859	anti-parallel
Strand 3	A	778	789	anti-parallel
Strand 4	A	824	826	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	761	768	first strand
Strand 2	A	832	840	anti-parallel
Strand 3	A	804	809	anti-parallel
Strand 4	A	812	814	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	743	747	first strand
Strand 2	C	849	858	anti-parallel
Strand 3	C	778	790	anti-parallel
Strand 4	C	793	797	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	752	755	first strand
Strand 2	C	849	858	anti-parallel
Strand 3	C	778	790	anti-parallel
Strand 4	C	824	826	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	761	768	first strand
Strand 2	C	832	840	anti-parallel
Strand 3	C	804	809	anti-parallel
Strand 4	C	812	813	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	743	747	first strand
Strand 2	D	849	858	anti-parallel
Strand 3	D	778	790	anti-parallel
Strand 4	D	793	797	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	752	755	first strand
Strand 2	D	849	858	anti-parallel
Strand 3	D	778	790	anti-parallel
Strand 4	D	824	826	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	761	768	first strand
Strand 2	D	832	840	anti-parallel
Strand 3	D	804	809	anti-parallel
Strand 4	D	812	813	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	743	747	first strand
Strand 2	E	849	858	anti-parallel
Strand 3	E	778	790	anti-parallel
Strand 4	E	793	797	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	752	755	first strand
Strand 2	E	849	858	anti-parallel
Strand 3	E	778	790	anti-parallel
Strand 4	E	824	826	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	761	768	first strand
Strand 2	E	832	840	anti-parallel
Strand 3	E	804	809	anti-parallel
Strand 4	E	812	813	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	743	747	first strand
Strand 2	F	849	858	anti-parallel
Strand 3	F	778	790	anti-parallel
Strand 4	F	793	797	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	752	755	first strand
Strand 2	F	849	858	anti-parallel
Strand 3	F	778	790	anti-parallel
Strand 4	F	824	826	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	761	768	first strand
Strand 2	F	832	840	anti-parallel
Strand 3	F	804	809	anti-parallel
Strand 4	F	812	814	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	743	747	first strand
Strand 2	G	849	858	anti-parallel
Strand 3	G	778	790	anti-parallel
Strand 4	G	793	797	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	752	755	first strand
Strand 2	G	849	858	anti-parallel
Strand 3	G	778	790	anti-parallel
Strand 4	G	824	826	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	761	768	first strand
Strand 2	G	832	840	anti-parallel
Strand 3	G	804	809	anti-parallel
Strand 4	G	812	813	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	742	747	first strand
Strand 2	H	849	859	anti-parallel
Strand 3	H	778	790	anti-parallel
Strand 4	H	793	797	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	752	755	first strand
Strand 2	H	849	859	anti-parallel
Strand 3	H	778	790	anti-parallel
Strand 4	H	824	826	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	761	768	first strand
Strand 2	H	832	840	anti-parallel
Strand 3	H	804	809	anti-parallel
Strand 4	H	812	814	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QFB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFB