Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QFC entry

There are 5 chains in PDB entry 8QFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TYR 217
B	LEU 27	SER 786
C	GLN 5	MET 502
D	LYS 120	TRP 304
E	SER 2	ILE 77

There are 65 helices in PDB entry 8QFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	19	Right-handed alpha
Helix 2	AA2	A	70	79	Right-handed alpha
Helix 3	AA3	A	86	93	Right-handed alpha
Helix 4	AA4	A	96	107	Right-handed alpha
Helix 5	AA5	A	114	118	Right-handed alpha
Helix 6	AA6	A	119	124	Right-handed alpha
Helix 7	AA7	A	143	152	Right-handed alpha
Helix 8	AA8	A	177	194	Right-handed alpha
Helix 9	AA9	B	29	43	Right-handed alpha
Helix 10	AB1	B	58	73	Right-handed alpha
Helix 11	AB2	B	79	87	Right-handed alpha
Helix 12	AB3	B	89	104	Right-handed alpha
Helix 13	AB4	B	117	135	Right-handed alpha
Helix 14	AB5	B	138	147	Right-handed alpha
Helix 15	AB6	B	149	160	Right-handed alpha
Helix 16	AB7	B	179	195	Right-handed alpha
Helix 17	AB8	B	203	211	Right-handed alpha
Helix 18	AB9	B	213	227	Right-handed alpha
Helix 19	AC1	B	247	265	Right-handed alpha
Helix 20	AC2	B	270	275	Right-handed alpha
Helix 21	AC3	B	279	288	Right-handed alpha
Helix 22	AC4	B	304	320	Right-handed alpha
Helix 23	AC5	B	326	329	Right-handed 310
Helix 24	AC6	B	334	347	Right-handed alpha
Helix 25	AC7	B	365	388	Right-handed alpha
Helix 26	AC8	B	478	490	Right-handed alpha
Helix 27	AC9	B	494	524	Right-handed alpha
Helix 28	AD1	B	527	535	Right-handed alpha
Helix 29	AD2	B	536	561	Right-handed alpha
Helix 30	AD3	B	562	594	Right-handed alpha
Helix 31	AD4	B	599	603	Right-handed 310
Helix 32	AD5	B	604	613	Right-handed alpha
Helix 33	AD6	B	616	629	Right-handed alpha
Helix 34	AD7	B	630	632	Right-handed 310
Helix 35	AD8	B	635	649	Right-handed alpha
Helix 36	AD9	B	657	679	Right-handed alpha
Helix 37	AE1	B	681	699	Right-handed alpha
Helix 38	AE2	B	708	717	Right-handed alpha
Helix 39	AE3	B	721	733	Right-handed alpha
Helix 40	AE4	B	774	786	Right-handed alpha
Helix 41	AE5	C	15	23	Right-handed alpha
Helix 42	AE6	C	29	47	Right-handed alpha
Helix 43	AE7	C	65	79	Right-handed alpha
Helix 44	AE8	C	91	106	Right-handed alpha
Helix 45	AE9	C	108	125	Right-handed alpha
Helix 46	AF1	C	125	168	Right-handed alpha
Helix 47	AF2	C	174	185	Right-handed alpha
Helix 48	AF3	C	188	199	Right-handed alpha
Helix 49	AF4	C	201	216	Right-handed alpha
Helix 50	AF5	C	224	233	Right-handed alpha
Helix 51	AF6	C	237	243	Right-handed alpha
Helix 52	AF7	C	346	373	Right-handed alpha
Helix 53	AF8	C	376	383	Right-handed alpha
Helix 54	AF9	C	394	418	Right-handed alpha
Helix 55	AG1	C	419	425	Right-handed alpha
Helix 56	AG2	C	427	469	Right-handed alpha
Helix 57	AG3	C	469	494	Right-handed alpha
Helix 58	AG4	D	121	188	Right-handed alpha
Helix 59	AG5	D	208	227	Right-handed alpha
Helix 60	AG6	D	232	239	Right-handed alpha
Helix 61	AG7	D	241	256	Right-handed alpha
Helix 62	AG8	D	272	287	Right-handed alpha
Helix 63	AG9	D	291	302	Right-handed alpha
Helix 64	AH1	E	28	41	Right-handed alpha
Helix 65	AH2	E	62	70	Right-handed alpha

There are 12 sheets in PDB entry 8QFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	171	first strand
Strand 2	A	31	38	anti-parallel
Strand 3	A	201	207	anti-parallel
Strand 4	A	214	217	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	54	first strand
Strand 2	A	154	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	68	first strand
Strand 2	A	109	113	parallel
Strand 3	A	136	138	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	55	57	anti-parallel
Strand 3	D	288	290	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	113	116	anti-parallel
Strand 3	B	107	109	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	177	178	anti-parallel
Strand 3	B	168	169	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	243	246	anti-parallel
Strand 3	B	232	235	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	300	302	anti-parallel
Strand 3	B	293	295	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	362	364	anti-parallel
Strand 3	B	356	358	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	499	502	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	203	first strand
Strand 2	E	17	23	anti-parallel
Strand 3	E	4	10	anti-parallel
Strand 4	E	73	76	parallel
Strand 5	E	50	51	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	229	first strand
Strand 2	D	267	270	anti-parallel
Strand 3	D	260	263	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFC