Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QFT entry

There is 1 chain in PDB entry 8QFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 1174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8QFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
76 97Right-handed alpha
Helix 3
AA3
A
97 109Right-handed alpha
Helix 4
AA4
A
193 210Right-handed alpha
Helix 5
AA5
A
238 244Right-handed alpha
Helix 6
AA6
A
262 281Right-handed alpha
Helix 7
AA7
A
292 300Right-handed alpha
Helix 8
AA8
A
303 310Right-handed alpha
Helix 9
AA9
A
311 319Right-handed alpha
Helix 10
AB1
A
330 334Right-handed 310
Helix 11
AB2
A
343 347Right-handed alpha
Helix 12
AB3
A
406 411Right-handed alpha
Helix 13
AB4
A
436 442Right-handed alpha
Helix 14
AB5
A
475 484Right-handed alpha
Helix 15
AB6
A
498 505Right-handed alpha
Helix 16
AB7
A
515 524Right-handed alpha
Helix 17
AB8
A
533 553Right-handed alpha
Helix 18
AB9
A
570 575Right-handed alpha
Helix 19
AC1
A
582 591Right-handed alpha
Helix 20
AC2
A
592 596Right-handed 310
Helix 21
AC3
A
618 623Right-handed alpha
Helix 22
AC4
A
624 654Right-handed alpha
Helix 23
AC5
A
655 690Right-handed alpha
Helix 24
AC6
A
694 739Right-handed alpha
Helix 25
AC7
A
739 761Right-handed alpha
Helix 26
AC8
A
771 781Right-handed alpha
Helix 27
AC9
A
784 789Right-handed alpha
Helix 28
AD1
A
792 801Right-handed alpha
Helix 29
AD2
A
1003 1014Right-handed alpha
Helix 30
AD3
A
1166 1170Right-handed 310
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There are 14 sheets in PDB entry 8QFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
44 46anti-parallel
Strand 4
A
145 148parallel
Strand 5
A
176 178parallel
Strand 6
A
158 160anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
340 341anti-parallel
Strand 3
A
363 364anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 224first strand
Strand 2
A
233 237anti-parallel
Strand 3
A
403 404anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 349first strand
Strand 2
A
352 353anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 394first strand
Strand 2
A
381 385anti-parallel
Strand 3
A
470 471parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 496first strand
Strand 2
A
510 512parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 557first strand
Strand 2
A
565 566anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
820 824first strand
Strand 2
A
827 831anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 842first strand
Strand 2
A
866 868anti-parallel
Strand 3
A
981 983anti-parallel
Strand 4
A
895 903anti-parallel
Strand 5
A
906 913anti-parallel
Strand 6
A
916 922anti-parallel
Strand 7
A
928 933anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 850first strand
Strand 2
A
855 859anti-parallel
Strand 3
A
990 998anti-parallel
Strand 4
A
881 889anti-parallel
Strand 5
A
942 949anti-parallel
Strand 6
A
954 959anti-parallel
Strand 7
A
962 963anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 850first strand
Strand 2
A
855 859anti-parallel
Strand 3
A
990 998anti-parallel
Strand 4
A
881 889anti-parallel
Strand 5
A
942 949anti-parallel
Strand 6
A
954 959anti-parallel
Strand 7
A
967 968anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1034first strand
Strand 2
A
1071 1074anti-parallel
Strand 3
A
1088 1093anti-parallel
Strand 4
A
1120 1125anti-parallel
Strand 5
A
1128 1136anti-parallel
Strand 6
A
1139 1143anti-parallel
Strand 7
A
1150 1157anti-parallel
Strand 8
A
1056 1060anti-parallel
Strand 9
A
1046 1049anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1037first strand
Strand 2
A
1172 1173anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1100 1101first strand
Strand 2
A
1110 1111anti-parallel
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