Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QFX entry

There are 2 chains in PDB entry 8QFX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 1	LEU 613
B	LEU 1	GLN 584

There are121 helices in PDB entry 8QFX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	6	Right-handed 310
Helix 2	AA2	A	13	44	Right-handed alpha
Helix 3	AA3	A	47	77	Right-handed alpha
Helix 4	AA4	A	79	83	Right-handed 310
Helix 5	AA5	A	85	96	Right-handed alpha
Helix 6	AA6	A	98	103	Right-handed 310
Helix 7	AA7	A	104	125	Right-handed alpha
Helix 8	AA8	A	141	150	Right-handed alpha
Helix 9	AA9	A	152	188	Right-handed alpha
Helix 10	AB1	A	193	201	Right-handed alpha
Helix 11	AB2	A	206	238	Right-handed alpha
Helix 12	AB3	A	261	263	Right-handed 310
Helix 13	AB4	A	264	269	Right-handed alpha
Helix 14	AB5	A	279	287	Right-handed alpha
Helix 15	AB6	A	289	304	Right-handed alpha
Helix 16	AB7	A	310	317	Right-handed alpha
Helix 17	AB8	A	352	373	Right-handed alpha
Helix 18	AB9	A	376	380	Right-handed 310
Helix 19	AC1	A	384	400	Right-handed alpha
Helix 20	AC2	A	401	408	Right-handed alpha
Helix 21	AC3	A	417	433	Right-handed alpha
Helix 22	AC4	A	435	452	Right-handed alpha
Helix 23	AC5	A	455	457	Right-handed 310
Helix 24	AC6	A	458	472	Right-handed alpha
Helix 25	AC7	A	484	489	Right-handed 310
Helix 26	AC8	A	498	519	Right-handed alpha
Helix 27	AC9	A	524	528	Right-handed 310
Helix 28	AD1	A	533	547	Right-handed alpha
Helix 29	AD2	A	551	561	Right-handed alpha
Helix 30	AD3	A	567	588	Right-handed alpha
Helix 31	AD4	B	2	6	Right-handed 310
Helix 32	AD5	B	13	44	Right-handed alpha
Helix 33	AD6	B	47	77	Right-handed alpha
Helix 34	AD7	B	79	83	Right-handed 310
Helix 35	AD8	B	85	96	Right-handed alpha
Helix 36	AD9	B	98	103	Right-handed 310
Helix 37	AE1	B	104	125	Right-handed alpha
Helix 38	AE2	B	141	150	Right-handed alpha
Helix 39	AE3	B	152	188	Right-handed alpha
Helix 40	AE4	B	193	201	Right-handed alpha
Helix 41	AE5	B	206	238	Right-handed alpha
Helix 42	AE6	B	261	263	Right-handed 310
Helix 43	AE7	B	264	269	Right-handed alpha
Helix 44	AE8	B	279	286	Right-handed alpha
Helix 45	AE9	B	289	304	Right-handed alpha
Helix 46	AF1	B	310	317	Right-handed alpha
Helix 47	AF2	B	352	372	Right-handed alpha
Helix 48	AF3	B	376	380	Right-handed 310
Helix 49	AF4	B	384	400	Right-handed alpha
Helix 50	AF5	B	401	408	Right-handed alpha
Helix 51	AF6	B	417	433	Right-handed alpha
Helix 52	AF7	B	435	451	Right-handed alpha
Helix 53	AF8	B	455	457	Right-handed 310
Helix 54	AF9	B	458	472	Right-handed alpha
Helix 55	AG1	B	484	489	Right-handed 310
Helix 56	AG2	B	498	520	Right-handed alpha
Helix 57	AG3	B	524	528	Right-handed 310
Helix 58	AG4	B	533	547	Right-handed alpha
Helix 59	AG5	B	551	561	Right-handed alpha
Helix 60	AG6	B	567	588	Right-handed alpha
Helix 61	AG7	B	608	614	Right-handed 310
Helix 62	AG8	C	2	6	Right-handed 310
Helix 63	AG9	C	13	44	Right-handed alpha
Helix 64	AH1	C	47	77	Right-handed alpha
Helix 65	AH2	C	79	83	Right-handed 310
Helix 66	AH3	C	85	96	Right-handed alpha
Helix 67	AH4	C	98	103	Right-handed 310
Helix 68	AH5	C	104	125	Right-handed alpha
Helix 69	AH6	C	141	150	Right-handed alpha
Helix 70	AH7	C	152	188	Right-handed alpha
Helix 71	AH8	C	193	201	Right-handed alpha
Helix 72	AH9	C	206	238	Right-handed alpha
Helix 73	AI1	C	261	263	Right-handed 310
Helix 74	AI2	C	264	269	Right-handed alpha
Helix 75	AI3	C	279	287	Right-handed alpha
Helix 76	AI4	C	289	304	Right-handed alpha
Helix 77	AI5	C	310	317	Right-handed alpha
Helix 78	AI6	C	352	373	Right-handed alpha
Helix 79	AI7	C	376	380	Right-handed 310
Helix 80	AI8	C	384	400	Right-handed alpha
Helix 81	AI9	C	401	408	Right-handed alpha
Helix 82	AJ1	C	417	433	Right-handed alpha
Helix 83	AJ2	C	435	451	Right-handed alpha
Helix 84	AJ3	C	455	457	Right-handed 310
Helix 85	AJ4	C	458	472	Right-handed alpha
Helix 86	AJ5	C	484	489	Right-handed 310
Helix 87	AJ6	C	498	519	Right-handed alpha
Helix 88	AJ7	C	524	528	Right-handed 310
Helix 89	AJ8	C	533	547	Right-handed alpha
Helix 90	AJ9	C	551	561	Right-handed alpha
Helix 91	AK1	C	567	588	Right-handed alpha
Helix 92	AK2	D	2	6	Right-handed 310
Helix 93	AK3	D	13	44	Right-handed alpha
Helix 94	AK4	D	47	77	Right-handed alpha
Helix 95	AK5	D	79	83	Right-handed 310
Helix 96	AK6	D	85	96	Right-handed alpha
Helix 97	AK7	D	98	103	Right-handed 310
Helix 98	AK8	D	104	125	Right-handed alpha
Helix 99	AK9	D	141	150	Right-handed alpha
Helix 100	AL1	D	152	188	Right-handed alpha
Helix 101	AL2	D	193	201	Right-handed alpha
Helix 102	AL3	D	206	238	Right-handed alpha
Helix 103	AL4	D	261	263	Right-handed 310
Helix 104	AL5	D	264	269	Right-handed alpha
Helix 105	AL6	D	279	287	Right-handed alpha
Helix 106	AL7	D	289	304	Right-handed alpha
Helix 107	AL8	D	310	317	Right-handed alpha
Helix 108	AL9	D	352	372	Right-handed alpha
Helix 109	AM1	D	376	380	Right-handed 310
Helix 110	AM2	D	384	400	Right-handed alpha
Helix 111	AM3	D	401	408	Right-handed alpha
Helix 112	AM4	D	417	433	Right-handed alpha
Helix 113	AM5	D	435	451	Right-handed alpha
Helix 114	AM6	D	455	457	Right-handed 310
Helix 115	AM7	D	458	472	Right-handed alpha
Helix 116	AM8	D	484	489	Right-handed 310
Helix 117	AM9	D	498	519	Right-handed alpha
Helix 118	AN1	D	524	528	Right-handed 310
Helix 119	AN2	D	533	547	Right-handed alpha
Helix 120	AN3	D	551	561	Right-handed alpha
Helix 121	AN4	D	567	588	Right-handed alpha

There are 10 sheets in PDB entry 8QFX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	249	first strand
Strand 2	A	473	474	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	336	first strand
Strand 2	A	343	346	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	136	137	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	473	474	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	343	346	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	249	first strand
Strand 2	C	473	474	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	336	first strand
Strand 2	C	343	346	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	128	first strand
Strand 2	D	136	137	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	249	first strand
Strand 2	D	473	474	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	336	first strand
Strand 2	D	343	346	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QFX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QFX