Analysis of interatomic Contacts of Structural Units in PDB entry:
8QG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QG0 entry

There are 4 chains in PDB entry 8QG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 427
B
 SER 18ASN 246
P
 A 1 T 17
Q
 A 1 U 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8QG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 36Right-handed alpha
Helix 2
AA2
A
58 73Right-handed alpha
Helix 3
AA3
A
92 107Right-handed alpha
Helix 4
AA4
A
119 132Right-handed alpha
Helix 5
AA5
A
141 147Right-handed alpha
Helix 6
AA6
A
148 164Right-handed alpha
Helix 7
AA7
A
221 241Right-handed alpha
Helix 8
AA8
A
263 277Right-handed alpha
Helix 9
AA9
A
303 307Right-handed 310
Helix 10
AB1
A
359 376Right-handed alpha
Helix 11
AB2
A
388 407Right-handed alpha
Helix 12
AB3
A
417 421Right-handed 310
Helix 13
AB4
B
77 93Right-handed alpha
Helix 14
AB5
B
163 168Right-handed alpha
Helix 15
AB6
B
175 187Right-handed alpha
Helix 16
AB7
B
199 216Right-handed alpha
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There are 11 sheets in PDB entry 8QG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
170 171anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
49 53parallel
Strand 3
A
110 111parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
139 140parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
251 252parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
194 197anti-parallel
Strand 3
A
217 218anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
210 213anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
346 349anti-parallel
Strand 3
A
322 325anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
145 149anti-parallel
Strand 3
B
126 135anti-parallel
Strand 4
B
109 114anti-parallel
Strand 5
B
101 105anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 26first strand
Strand 2
B
145 149anti-parallel
Strand 3
B
126 135anti-parallel
Strand 4
B
152 154anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
231 234anti-parallel
Strand 3
B
223 226anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 41first strand
Strand 2
B
58 62anti-parallel
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