Analysis of interatomic Contacts of Structural Units in PDB entry:
8QGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QGR entry

There is 1 chain in PDB entry 8QGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 41SER 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8QGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
41 55Right-handed alpha
Helix 2
AA2
B
104 108Right-handed 310
Helix 3
AA3
B
111 116Right-handed alpha
Helix 4
AA4
B
152 159Right-handed alpha
Helix 5
AA5
B
180 182Right-handed 310
Helix 6
AA6
B
195 198Right-handed 310
Helix 7
AA7
B
248 250Right-handed 310
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There are 3 sheets in PDB entry 8QGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
166 174anti-parallel
Strand 3
B
201 218anti-parallel
Strand 4
B
239 246anti-parallel
Strand 5
B
119 125anti-parallel
Strand 6
B
94 101anti-parallel
Strand 7
B
56 61anti-parallel
Strand 8
B
135 150anti-parallel
Strand 9
B
201 218anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
88 90anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
190 193anti-parallel
Strand 3
B
184 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il