Analysis of interatomic Contacts of Structural Units in PDB entry:
8QGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QGU entry

There are 2 chains in PDB entry 8QGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1TYR 2151
B
MET 1TYR 2151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are186 helices in PDB entry 8QGU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
20 48Right-handed alpha
Helix 3
AA3
A
56 64Right-handed alpha
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
87 94Right-handed alpha
Helix 6
AA6
A
116 146Right-handed alpha
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
176 197Right-handed alpha
Helix 9
AA9
A
200 202Right-handed 310
Helix 10
AB1
A
203 216Right-handed alpha
Helix 11
AB2
A
239 252Right-handed alpha
Helix 12
AB3
A
264 282Right-handed alpha
Helix 13
AB4
A
306 322Right-handed alpha
Helix 14
AB5
A
328 343Right-handed alpha
Helix 15
AB6
A
345 352Right-handed alpha
Helix 16
AB7
A
379 391Right-handed alpha
Helix 17
AB8
A
409 429Right-handed alpha
Helix 18
AB9
A
450 458Right-handed alpha
Helix 19
AC1
A
458 463Right-handed alpha
Helix 20
AC2
A
463 469Right-handed alpha
Helix 21
AC3
A
470 490Right-handed alpha
Helix 22
AC4
A
491 496Right-handed alpha
Helix 23
AC5
A
563 572Right-handed alpha
Helix 24
AC6
A
572 593Right-handed alpha
Helix 25
AC7
A
597 614Right-handed alpha
Helix 26
AC8
A
616 635Right-handed alpha
Helix 27
AC9
A
639 649Right-handed alpha
Helix 28
AD1
A
654 675Right-handed alpha
Helix 29
AD2
A
712 726Right-handed alpha
Helix 30
AD3
A
730 733Right-handed 310
Helix 31
AD4
A
734 760Right-handed alpha
Helix 32
AD5
A
760 767Right-handed alpha
Helix 33
AD6
A
769 777Right-handed alpha
Helix 34
AD7
A
786 802Right-handed alpha
Helix 35
AD8
A
804 814Right-handed alpha
Helix 36
AD9
A
820 828Right-handed 310
Helix 37
AE1
A
848 859Right-handed alpha
Helix 38
AE2
A
864 872Right-handed alpha
Helix 39
AE3
A
898 917Right-handed alpha
Helix 40
AE4
A
918 920Right-handed 310
Helix 41
AE5
A
930 948Right-handed alpha
Helix 42
AE6
A
983 991Right-handed alpha
Helix 43
AE7
A
999 1013Right-handed alpha
Helix 44
AE8
A
1020 1029Right-handed alpha
Helix 45
AE9
A
1034 1044Right-handed alpha
Helix 46
AF1
A
1061 1084Right-handed alpha
Helix 47
AF2
A
1114 1126Right-handed alpha
Helix 48
AF3
A
1127 1132Right-handed 310
Helix 49
AF4
A
1138 1153Right-handed alpha
Helix 50
AF5
A
1168 1181Right-handed alpha
Helix 51
AF6
A
1184 1195Right-handed alpha
Helix 52
AF7
A
1200 1219Right-handed alpha
Helix 53
AF8
A
1221 1241Right-handed alpha
Helix 54
AF9
A
1249 1253Right-handed 310
Helix 55
AG1
A
1272 1279Right-handed alpha
Helix 56
AG2
A
1282 1297Right-handed alpha
Helix 57
AG3
A
1302 1319Right-handed alpha
Helix 58
AG4
A
1322 1326Right-handed 310
Helix 59
AG5
A
1349 1353Right-handed 310
Helix 60
AG6
A
1354 1365Right-handed alpha
Helix 61
AG7
A
1366 1370Right-handed 310
Helix 62
AG8
A
1375 1388Right-handed alpha
Helix 63
AG9
A
1389 1397Right-handed alpha
Helix 64
AH1
A
1402 1412Right-handed alpha
Helix 65
AH2
A
1425 1439Right-handed alpha
Helix 66
AH3
A
1443 1455Right-handed alpha
Helix 67
AH4
A
1463 1470Right-handed alpha
Helix 68
AH5
A
1502 1512Right-handed alpha
Helix 69
AH6
A
1514 1525Right-handed alpha
Helix 70
AH7
A
1527 1529Right-handed 310
Helix 71
AH8
A
1530 1546Right-handed alpha
Helix 72
AH9
A
1552 1564Right-handed alpha
Helix 73
AI1
A
1581 1592Right-handed alpha
Helix 74
AI2
A
1616 1642Right-handed alpha
Helix 75
AI3
A
1645 1651Right-handed alpha
Helix 76
AI4
A
1660 1671Right-handed alpha
Helix 77
AI5
A
1675 1677Right-handed 310
Helix 78
AI6
A
1678 1690Right-handed alpha
Helix 79
AI7
A
1693 1704Right-handed alpha
Helix 80
AI8
A
1759 1778Right-handed alpha
Helix 81
AI9
A
1820 1823Right-handed 310
Helix 82
AJ1
A
1867 1871Right-handed 310
Helix 83
AJ2
A
1888 1894Right-handed alpha
Helix 84
AJ3
A
1896 1903Right-handed alpha
Helix 85
AJ4
A
1909 1918Right-handed alpha
Helix 86
AJ5
A
1923 1937Right-handed alpha
Helix 87
AJ6
A
2034 2041Right-handed alpha
Helix 88
AJ7
A
2054 2069Right-handed alpha
Helix 89
AJ8
A
2080 2092Right-handed alpha
Helix 90
AJ9
A
2094 2099Right-handed alpha
Helix 91
AK1
A
2102 2116Right-handed alpha
Helix 92
AK2
A
2130 2142Right-handed alpha
Helix 93
AK3
A
2146 2151Right-handed alpha
Helix 94
AK4
B
2 12Right-handed alpha
Helix 95
AK5
B
20 48Right-handed alpha
Helix 96
AK6
B
56 64Right-handed alpha
Helix 97
AK7
B
67 76Right-handed alpha
Helix 98
AK8
B
87 94Right-handed alpha
Helix 99
AK9
B
116 146Right-handed alpha
Helix 100
AL1
B
167 172Right-handed alpha
Helix 101
AL2
B
176 197Right-handed alpha
Helix 102
AL3
B
200 202Right-handed 310
Helix 103
AL4
B
203 216Right-handed alpha
Helix 104
AL5
B
239 252Right-handed alpha
Helix 105
AL6
B
264 282Right-handed alpha
Helix 106
AL7
B
306 322Right-handed alpha
Helix 107
AL8
B
328 343Right-handed alpha
Helix 108
AL9
B
345 352Right-handed alpha
Helix 109
AM1
B
379 391Right-handed alpha
Helix 110
AM2
B
409 429Right-handed alpha
Helix 111
AM3
B
450 458Right-handed alpha
Helix 112
AM4
B
458 463Right-handed alpha
Helix 113
AM5
B
463 469Right-handed alpha
Helix 114
AM6
B
470 490Right-handed alpha
Helix 115
AM7
B
491 496Right-handed alpha
Helix 116
AM8
B
563 572Right-handed alpha
Helix 117
AM9
B
572 593Right-handed alpha
Helix 118
AN1
B
597 614Right-handed alpha
Helix 119
AN2
B
616 635Right-handed alpha
Helix 120
AN3
B
639 649Right-handed alpha
Helix 121
AN4
B
654 675Right-handed alpha
Helix 122
AN5
B
712 726Right-handed alpha
Helix 123
AN6
B
730 733Right-handed 310
Helix 124
AN7
B
734 760Right-handed alpha
Helix 125
AN8
B
760 767Right-handed alpha
Helix 126
AN9
B
769 777Right-handed alpha
Helix 127
AO1
B
786 802Right-handed alpha
Helix 128
AO2
B
804 814Right-handed alpha
Helix 129
AO3
B
820 828Right-handed 310
Helix 130
AO4
B
848 859Right-handed alpha
Helix 131
AO5
B
864 872Right-handed alpha
Helix 132
AO6
B
898 917Right-handed alpha
Helix 133
AO7
B
918 920Right-handed 310
Helix 134
AO8
B
930 948Right-handed alpha
Helix 135
AO9
B
983 991Right-handed alpha
Helix 136
AP1
B
999 1013Right-handed alpha
Helix 137
AP2
B
1020 1029Right-handed alpha
Helix 138
AP3
B
1034 1044Right-handed alpha
Helix 139
AP4
B
1061 1084Right-handed alpha
Helix 140
AP5
B
1114 1126Right-handed alpha
Helix 141
AP6
B
1127 1132Right-handed 310
Helix 142
AP7
B
1138 1153Right-handed alpha
Helix 143
AP8
B
1168 1181Right-handed alpha
Helix 144
AP9
B
1184 1195Right-handed alpha
Helix 145
AQ1
B
1200 1219Right-handed alpha
Helix 146
AQ2
B
1221 1241Right-handed alpha
Helix 147
AQ3
B
1249 1253Right-handed 310
Helix 148
AQ4
B
1272 1279Right-handed alpha
Helix 149
AQ5
B
1282 1297Right-handed alpha
Helix 150
AQ6
B
1302 1319Right-handed alpha
Helix 151
AQ7
B
1322 1326Right-handed 310
Helix 152
AQ8
B
1349 1353Right-handed 310
Helix 153
AQ9
B
1354 1365Right-handed alpha
Helix 154
AR1
B
1366 1370Right-handed 310
Helix 155
AR2
B
1375 1388Right-handed alpha
Helix 156
AR3
B
1389 1397Right-handed alpha
Helix 157
AR4
B
1402 1412Right-handed alpha
Helix 158
AR5
B
1425 1439Right-handed alpha
Helix 159
AR6
B
1443 1455Right-handed alpha
Helix 160
AR7
B
1463 1470Right-handed alpha
Helix 161
AR8
B
1502 1512Right-handed alpha
Helix 162
AR9
B
1514 1525Right-handed alpha
Helix 163
AS1
B
1527 1529Right-handed 310
Helix 164
AS2
B
1530 1546Right-handed alpha
Helix 165
AS3
B
1552 1564Right-handed alpha
Helix 166
AS4
B
1581 1592Right-handed alpha
Helix 167
AS5
B
1616 1642Right-handed alpha
Helix 168
AS6
B
1645 1651Right-handed alpha
Helix 169
AS7
B
1660 1671Right-handed alpha
Helix 170
AS8
B
1675 1677Right-handed 310
Helix 171
AS9
B
1678 1690Right-handed alpha
Helix 172
AT1
B
1693 1704Right-handed alpha
Helix 173
AT2
B
1759 1778Right-handed alpha
Helix 174
AT3
B
1820 1823Right-handed 310
Helix 175
AT4
B
1867 1871Right-handed 310
Helix 176
AT5
B
1888 1894Right-handed alpha
Helix 177
AT6
B
1896 1903Right-handed alpha
Helix 178
AT7
B
1909 1918Right-handed alpha
Helix 179
AT8
B
1923 1937Right-handed alpha
Helix 180
AT9
B
2034 2041Right-handed alpha
Helix 181
AU1
B
2054 2069Right-handed alpha
Helix 182
AU2
B
2080 2092Right-handed alpha
Helix 183
AU3
B
2094 2099Right-handed alpha
Helix 184
AU4
B
2102 2116Right-handed alpha
Helix 185
AU5
B
2130 2142Right-handed alpha
Helix 186
AU6
B
2146 2151Right-handed alpha
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There are 38 sheets in PDB entry 8QGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 102first strand
Strand 2
A
105 113anti-parallel
Strand 3
A
153 161parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1166anti-parallel
Strand 4
A
959 971anti-parallel
Strand 5
A
1099 1109anti-parallel
Strand 6
A
1090 1096anti-parallel
Strand 7
A
924 925parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1166anti-parallel
Strand 4
A
959 971anti-parallel
Strand 5
A
950 953anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
284 285first strand
Strand 2
A
404 405parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
552 556anti-parallel
Strand 5
A
545 549anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
683 685first strand
Strand 2
A
688 690anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
832 837first strand
Strand 2
A
843 847anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
895 897first strand
Strand 2
A
878 881anti-parallel
Strand 3
A
1014 1018parallel
Strand 4
A
1049 1053anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1417 1419first strand
Strand 2
A
1422 1424anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1473 1476first strand
Strand 2
A
1598 1601anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1486 1490first strand
Strand 2
A
1570 1574anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1658 1659first strand
Strand 2
A
1653 1655anti-parallel
Strand 3
A
1872 1873anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1706 1710first strand
Strand 2
A
1729 1735anti-parallel
Strand 3
A
1738 1745anti-parallel
Strand 4
A
1750 1755anti-parallel
Strand 5
A
1816 1818parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1717 1719first strand
Strand 2
A
1724 1726anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1783 1786first strand
Strand 2
A
1810 1813anti-parallel
Strand 3
A
1793 1796anti-parallel
Strand 4
A
1801 1804anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1833 1837first strand
Strand 2
A
1842 1846anti-parallel
Strand 3
A
1854 1858anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1878 1881first strand
Strand 2
A
1884 1887anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 102first strand
Strand 2
B
105 113anti-parallel
Strand 3
B
153 161parallel
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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
260 261first strand
Strand 2
B
637 638anti-parallel
Strand 3
B
1163 1166anti-parallel
Strand 4
B
959 971anti-parallel
Strand 5
B
1099 1109anti-parallel
Strand 6
B
1090 1096anti-parallel
Strand 7
B
924 925parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
260 261first strand
Strand 2
B
637 638anti-parallel
Strand 3
B
1163 1166anti-parallel
Strand 4
B
959 971anti-parallel
Strand 5
B
950 953anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
284 285first strand
Strand 2
B
404 405parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
499 503first strand
Strand 2
B
508 512anti-parallel
Strand 3
B
525 532anti-parallel
Strand 4
B
552 556anti-parallel
Strand 5
B
545 549anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
499 503first strand
Strand 2
B
508 512anti-parallel
Strand 3
B
525 532anti-parallel
Strand 4
B
560 562anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
683 685first strand
Strand 2
B
688 690anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
701 702first strand
Strand 2
B
709 710anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
832 837first strand
Strand 2
B
843 847anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
895 897first strand
Strand 2
B
878 881anti-parallel
Strand 3
B
1014 1018parallel
Strand 4
B
1049 1053anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1417 1419first strand
Strand 2
B
1422 1424anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1473 1476first strand
Strand 2
B
1598 1601anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1486 1490first strand
Strand 2
B
1570 1574anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1658 1659first strand
Strand 2
B
1653 1655anti-parallel
Strand 3
B
1872 1873anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1706 1710first strand
Strand 2
B
1729 1735anti-parallel
Strand 3
B
1738 1745anti-parallel
Strand 4
B
1750 1755anti-parallel
Strand 5
B
1816 1818parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1717 1719first strand
Strand 2
B
1724 1726anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1783 1786first strand
Strand 2
B
1810 1813anti-parallel
Strand 3
B
1793 1796anti-parallel
Strand 4
B
1801 1804anti-parallel
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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1833 1837first strand
Strand 2
B
1842 1846anti-parallel
Strand 3
B
1854 1858anti-parallel
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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1878 1881first strand
Strand 2
B
1884 1887anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il