Analysis of interatomic Contacts of Structural Units in PDB entry:
8QGY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QGY entry

There are 2 chains in PDB entry 8QGY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 95	VAL 940
B	TYR 95	PHE 272

There are 63 helices in PDB entry 8QGY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	112	Right-handed alpha
Helix 2	AA2	A	112	123	Right-handed alpha
Helix 3	AA3	A	139	148	Right-handed alpha
Helix 4	AA4	A	158	160	Right-handed 310
Helix 5	AA5	A	161	175	Right-handed alpha
Helix 6	AA6	A	188	200	Right-handed alpha
Helix 7	AA7	A	246	248	Right-handed 310
Helix 8	AA8	A	249	269	Right-handed alpha
Helix 9	AA9	A	270	284	Right-handed alpha
Helix 10	AB1	A	290	301	Right-handed alpha
Helix 11	AB2	A	302	304	Right-handed 310
Helix 12	AB3	A	310	321	Right-handed alpha
Helix 13	AB4	A	327	337	Right-handed alpha
Helix 14	AB5	A	348	363	Right-handed alpha
Helix 15	AB6	A	366	381	Right-handed alpha
Helix 16	AB7	A	386	404	Right-handed alpha
Helix 17	AB8	A	408	426	Right-handed alpha
Helix 18	AB9	A	429	442	Right-handed alpha
Helix 19	AC1	A	449	467	Right-handed alpha
Helix 20	AC2	A	474	489	Right-handed alpha
Helix 21	AC3	A	492	504	Right-handed alpha
Helix 22	AC4	A	507	523	Right-handed alpha
Helix 23	AC5	A	536	550	Right-handed alpha
Helix 24	AC6	A	639	654	Right-handed alpha
Helix 25	AC7	A	718	732	Right-handed alpha
Helix 26	AC8	A	762	769	Right-handed alpha
Helix 27	AC9	A	776	797	Right-handed alpha
Helix 28	AD1	A	847	854	Right-handed alpha
Helix 29	AD2	A	855	858	Right-handed 310
Helix 30	AD3	A	859	877	Right-handed alpha
Helix 31	AD4	A	908	919	Right-handed alpha
Helix 32	AD5	A	928	934	Right-handed alpha
Helix 33	AD6	A	935	939	Right-handed 310
Helix 34	AD7	B	103	109	Right-handed alpha
Helix 35	AD8	B	109	123	Right-handed alpha
Helix 36	AD9	B	163	172	Right-handed alpha
Helix 37	AE1	B	188	193	Right-handed 310
Helix 38	AE2	B	194	203	Right-handed alpha
Helix 39	AE3	B	249	269	Right-handed alpha
Helix 40	AE4	B	269	287	Right-handed alpha
Helix 41	AE5	B	289	304	Right-handed alpha
Helix 42	AE6	B	310	324	Right-handed alpha
Helix 43	AE7	B	327	340	Right-handed alpha
Helix 44	AE8	B	349	363	Right-handed alpha
Helix 45	AE9	B	366	381	Right-handed alpha
Helix 46	AF1	B	386	404	Right-handed alpha
Helix 47	AF2	B	410	426	Right-handed alpha
Helix 48	AF3	B	429	443	Right-handed alpha
Helix 49	AF4	B	449	467	Right-handed alpha
Helix 50	AF5	B	474	488	Right-handed alpha
Helix 51	AF6	B	493	505	Right-handed alpha
Helix 52	AF7	B	507	525	Right-handed alpha
Helix 53	AF8	B	535	549	Right-handed alpha
Helix 54	AF9	B	639	653	Right-handed alpha
Helix 55	AG1	B	719	731	Right-handed alpha
Helix 56	AG2	B	762	769	Right-handed alpha
Helix 57	AG3	B	777	797	Right-handed alpha
Helix 58	AG4	B	822	826	Right-handed 310
Helix 59	AG5	B	847	852	Right-handed alpha
Helix 60	AG6	B	859	877	Right-handed alpha
Helix 61	AG7	B	886	898	Right-handed alpha
Helix 62	AG8	B	908	919	Right-handed alpha
Helix 63	AG9	B	928	934	Right-handed alpha

There are 13 sheets in PDB entry 8QGY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	130	131	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	181	185	parallel
Strand 3	A	211	215	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	565	first strand
Strand 2	A	569	579	anti-parallel
Strand 3	A	584	590	anti-parallel
Strand 4	A	601	605	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	614	first strand
Strand 2	A	621	624	anti-parallel
Strand 3	A	633	636	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	693	699	anti-parallel
Strand 3	A	685	688	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	693	699	anti-parallel
Strand 3	A	705	712	anti-parallel
Strand 4	A	749	754	anti-parallel
Strand 5	A	740	743	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	760	761	first strand
Strand 2	A	810	812	anti-parallel
Strand 3	A	817	819	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	800	first strand
Strand 2	A	827	828	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	181	184	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	605	first strand
Strand 2	B	583	590	anti-parallel
Strand 3	B	570	580	anti-parallel
Strand 4	B	559	564	anti-parallel
Strand 5	B	635	637	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	614	first strand
Strand 2	B	622	626	anti-parallel
Strand 3	B	632	633	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	674	first strand
Strand 2	B	693	699	anti-parallel
Strand 3	B	705	710	anti-parallel
Strand 4	B	751	755	anti-parallel
Strand 5	B	740	744	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	760	761	first strand
Strand 2	B	809	811	anti-parallel
Strand 3	B	818	820	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QGY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QGY