Analysis of interatomic Contacts of Structural Units in PDB entry:
8QH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QH2 entry

There is 1 chain in PDB entry 8QH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3GLU 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8QH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
15 20Right-handed 310
Helix 3
AA3
A
21 25Right-handed 310
Helix 4
AA4
A
26 40Right-handed alpha
Helix 5
AA5
A
41 54Right-handed alpha
Helix 6
AA6
A
88 102Right-handed alpha
Helix 7
AA7
A
123 127Right-handed 310
Helix 8
AA8
A
136 155Right-handed alpha
Helix 9
AA9
A
169 183Right-handed alpha
Helix 10
AB1
A
184 188Right-handed 310
Helix 11
AB2
A
189 191Right-handed 310
Helix 12
AB3
A
224 226Right-handed 310
Helix 13
AB4
A
227 234Right-handed alpha
Helix 14
AB5
A
236 243Right-handed alpha
Helix 15
AB6
A
263 273Right-handed alpha
Helix 16
AB7
A
310 314Right-handed 310
Helix 17
AB8
A
337 345Right-handed alpha
Helix 18
AB9
A
347 351Right-handed 310
Helix 19
AC1
A
383 389Right-handed 310
Helix 20
AC2
A
400 405Right-handed alpha
Helix 21
AC3
A
418 436Right-handed alpha
Helix 22
AC4
A
478 483Right-handed alpha
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There are 7 sheets in PDB entry 8QH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
293 297anti-parallel
Strand 3
A
300 304anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
164 168parallel
Strand 3
A
105 110parallel
Strand 4
A
248 253parallel
Strand 5
A
327 336anti-parallel
Strand 6
A
277 283anti-parallel
Strand 7
A
394 398parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 202first strand
Strand 2
A
220 222anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
354 358anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
217 218anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
486 488parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 467first strand
Strand 2
A
491 493parallel
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