Analysis of interatomic Contacts of Structural Units in PDB entry:
8QH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QH5 entry

There are 3 chains in PDB entry 8QH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	ASN 150
A	MET 1	TYR 366
B	MET 1	ARG 391

There are 23 helices in PDB entry 8QH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	1	14	Right-handed alpha
Helix 2	AA2	D	21	35	Right-handed alpha
Helix 3	AA3	D	35	51	Right-handed alpha
Helix 4	AA4	D	54	72	Right-handed alpha
Helix 5	AA5	D	72	82	Right-handed alpha
Helix 6	AA6	D	82	92	Right-handed alpha
Helix 7	AA7	D	102	125	Right-handed alpha
Helix 8	AA8	D	128	140	Right-handed alpha
Helix 9	AA9	A	2	11	Right-handed alpha
Helix 10	AB1	A	14	29	Right-handed alpha
Helix 11	AB2	B	250	255	Right-handed alpha
Helix 12	AB3	B	381	384	Right-handed 310
Helix 13	AB4	B	985	991	Right-handed alpha
Helix 14	AB5	B	1044	1062	Right-handed alpha
Helix 15	AB6	B	1064	1068	Right-handed 310
Helix 16	AB7	B	1069	1075	Right-handed alpha
Helix 17	AB8	B	1091	1096	Right-handed alpha
Helix 18	AB9	B	1097	1100	Right-handed 310
Helix 19	AC1	B	1101	1109	Right-handed alpha
Helix 20	AC2	B	1125	1139	Right-handed alpha
Helix 21	AC3	B	1140	1140	Right-handed 310
Helix 22	AC4	C	2	6	Right-handed 310
Helix 23	AC5	C	53	61	Right-handed alpha

There are 32 sheets in PDB entry 8QH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	358	363	anti-parallel
Strand 3	A	348	353	anti-parallel
Strand 4	A	337	343	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	82	84	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	58	63	anti-parallel
Strand 3	A	68	72	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	115	119	anti-parallel
Strand 3	A	123	127	anti-parallel
Strand 4	A	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	149	first strand
Strand 2	A	159	163	anti-parallel
Strand 3	A	168	172	anti-parallel
Strand 4	A	177	182	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	194	first strand
Strand 2	A	201	206	anti-parallel
Strand 3	A	211	215	anti-parallel
Strand 4	A	222	225	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	253	first strand
Strand 2	A	259	264	anti-parallel
Strand 3	A	268	273	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	307	312	anti-parallel
Strand 3	A	315	320	anti-parallel
Strand 4	A	328	330	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1004	1009	first strand
Strand 2	B	1028	1032	anti-parallel
Strand 3	B	1038	1042	anti-parallel
Strand 4	B	4	8	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel
Strand 5	C	34	35	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel
Strand 5	C	45	49	parallel
Strand 6	B	151	158	parallel
Strand 7	B	139	144	anti-parallel
Strand 8	B	130	134	anti-parallel
Strand 9	B	121	124	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	210	211	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	248	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	289	anti-parallel
Strand 4	B	295	307	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	393	anti-parallel
Strand 4	B	709	716	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	396	402	first strand
Strand 2	B	699	704	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	678	682	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	413	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	433	439	anti-parallel
Strand 4	B	442	446	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	463	first strand
Strand 2	B	467	472	anti-parallel
Strand 3	B	476	480	anti-parallel
Strand 4	B	486	490	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	503	first strand
Strand 2	B	507	512	anti-parallel
Strand 3	B	515	522	anti-parallel
Strand 4	B	525	533	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	542	first strand
Strand 2	B	555	560	anti-parallel
Strand 3	B	565	570	anti-parallel
Strand 4	B	576	581	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	596	first strand
Strand 2	B	599	606	anti-parallel
Strand 3	B	610	616	anti-parallel
Strand 4	B	623	630	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	643	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	657	661	anti-parallel
Strand 4	B	666	670	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	742	anti-parallel
Strand 3	B	750	751	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	742	anti-parallel
Strand 3	B	785	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	762	765	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	812	819	first strand
Strand 2	B	828	834	anti-parallel
Strand 3	B	846	854	anti-parallel
Strand 4	B	857	866	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	876	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	887	893	anti-parallel
Strand 4	B	899	905	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	911	917	first strand
Strand 2	B	920	925	anti-parallel
Strand 3	B	930	935	anti-parallel
Strand 4	B	942	947	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	964	969	anti-parallel
Strand 3	B	974	979	anti-parallel
Strand 4	B	992	998	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1121	1124	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QH5