Analysis of interatomic Contacts of Structural Units in PDB entry:
8QHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QHC entry

There are 9 chains in PDB entry 8QHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 SER 2SER 394
B
 G 1 A 7
B
 A 9 G 15
B
 C 17 G 19
B
 A 21 G 46
B
 C 48 G 53
B
 C 56 A 76
A
 ARG 3GLU 1619
D
 HIS 17GLU 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8QHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
24 40Right-handed alpha
Helix 2
AA2
C
53 60Right-handed alpha
Helix 3
AA3
C
85 87Right-handed 310
Helix 4
AA4
C
88 97Right-handed alpha
Helix 5
AA5
C
113 127Right-handed alpha
Helix 6
AA6
C
144 161Right-handed alpha
Helix 7
AA7
C
174 181Right-handed alpha
Helix 8
AA8
C
182 199Right-handed alpha
Helix 9
AA9
C
283 287Right-handed 310
Helix 10
AB1
C
313 317Right-handed 310
Helix 11
AB2
A
4 14Right-handed alpha
Helix 12
AB3
A
17 34Right-handed alpha
Helix 13
AB4
A
40 46Right-handed alpha
Helix 14
AB5
A
63 88Right-handed alpha
Helix 15
AB6
A
105 124Right-handed alpha
Helix 16
AB7
A
126 138Right-handed alpha
Helix 17
AB8
A
140 152Right-handed alpha
Helix 18
AB9
A
153 155Right-handed 310
Helix 19
AC1
A
169 174Right-handed 310
Helix 20
AC2
A
190 205Right-handed alpha
Helix 21
AC3
A
233 244Right-handed alpha
Helix 22
AC4
A
253 267Right-handed alpha
Helix 23
AC5
A
280 293Right-handed alpha
Helix 24
AC6
A
294 310Right-handed alpha
Helix 25
AC7
A
317 339Right-handed alpha
Helix 26
AC8
A
388 411Right-handed alpha
Helix 27
AC9
A
412 427Right-handed alpha
Helix 28
AD1
A
429 436Right-handed alpha
Helix 29
AD2
A
439 443Right-handed 310
Helix 30
AD3
A
444 466Right-handed alpha
Helix 31
AD4
A
466 479Right-handed alpha
Helix 32
AD5
A
485 489Right-handed 310
Helix 33
AD6
A
491 500Right-handed alpha
Helix 34
AD7
A
501 508Right-handed alpha
Helix 35
AD8
A
509 547Right-handed alpha
Helix 36
AD9
A
571 607Right-handed alpha
Helix 37
AE1
A
621 639Right-handed alpha
Helix 38
AE2
A
641 654Right-handed alpha
Helix 39
AE3
A
664 668Right-handed alpha
Helix 40
AE4
A
671 707Right-handed alpha
Helix 41
AE5
A
712 718Right-handed alpha
Helix 42
AE6
A
721 727Right-handed alpha
Helix 43
AE7
A
729 741Right-handed alpha
Helix 44
AE8
A
741 750Right-handed alpha
Helix 45
AE9
A
751 759Right-handed alpha
Helix 46
AF1
A
766 770Right-handed 310
Helix 47
AF2
A
779 805Right-handed alpha
Helix 48
AF3
A
821 844Right-handed alpha
Helix 49
AF4
A
848 859Right-handed alpha
Helix 50
AF5
A
860 863Right-handed 310
Helix 51
AF6
A
884 897Right-handed alpha
Helix 52
AF7
A
910 926Right-handed alpha
Helix 53
AF8
A
934 953Right-handed alpha
Helix 54
AF9
A
960 978Right-handed alpha
Helix 55
AG1
A
983 1014Right-handed alpha
Helix 56
AG2
A
1019 1039Right-handed alpha
Helix 57
AG3
A
1242 1259Right-handed alpha
Helix 58
AG4
A
1277 1288Right-handed alpha
Helix 59
AG5
A
1296 1312Right-handed alpha
Helix 60
AG6
A
1328 1349Right-handed alpha
Helix 61
AG7
A
1354 1369Right-handed alpha
Helix 62
AG8
A
1389 1409Right-handed alpha
Helix 63
AG9
A
1411 1421Right-handed alpha
Helix 64
AH1
A
1424 1440Right-handed alpha
Helix 65
AH2
A
1500 1508Right-handed alpha
Helix 66
AH3
A
1509 1511Right-handed 310
Helix 67
AH4
A
1516 1528Right-handed alpha
Helix 68
AH5
A
1532 1554Right-handed alpha
Helix 69
AH6
A
1560 1565Right-handed alpha
Helix 70
AH7
A
1568 1581Right-handed alpha
Helix 71
AH8
A
1582 1618Right-handed alpha
Helix 72
AH9
D
18 32Right-handed alpha
Helix 73
AI1
D
63 74Right-handed alpha
Helix 74
AI2
D
92 94Right-handed 310
Helix 75
AI3
D
95 126Right-handed alpha
Helix 76
AI4
D
133 137Right-handed 310
Helix 77
AI5
D
159 169Right-handed alpha
Helix 78
AI6
D
180 184Right-handed 310
Helix 79
AI7
D
187 203Right-handed alpha
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There are 6 sheets in PDB entry 8QHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
66 71first strand
Strand 2
C
76 81anti-parallel
Strand 3
C
12 18parallel
Strand 4
C
101 107parallel
Strand 5
C
131 136parallel
Strand 6
C
170 172parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
C
292 294anti-parallel
Strand 3
C
242 246anti-parallel
Strand 4
C
252 260anti-parallel
Strand 5
C
274 279anti-parallel
Strand 6
C
225 231anti-parallel
Strand 7
C
217 221anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 214first strand
Strand 2
C
292 294anti-parallel
Strand 3
C
242 246anti-parallel
Strand 4
C
252 260anti-parallel
Strand 5
C
265 266anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 238first strand
Strand 2
C
268 269anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 311first strand
Strand 2
C
356 367anti-parallel
Strand 3
C
336 343anti-parallel
Strand 4
C
330 333anti-parallel
Strand 5
C
374 379anti-parallel
Strand 6
C
382 394anti-parallel
Strand 7
C
302 311anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 158first strand
Strand 2
D
148 150anti-parallel
Strand 3
D
185 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il