Analysis of interatomic Contacts of Structural Units in PDB entry:
8QHP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QHP entry

There are 2 chains in PDB entry 8QHP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 418
B
 GLY 0GLU 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8QHP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 57Right-handed alpha
Helix 2
AA2
A
71 82Right-handed alpha
Helix 3
AA3
A
86 103Right-handed alpha
Helix 4
AA4
A
113 116Right-handed 310
Helix 5
AA5
A
117 131Right-handed alpha
Helix 6
AA6
A
145 148Right-handed 310
Helix 7
AA7
A
158 163Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
228 231Right-handed 310
Helix 10
AB1
A
232 246Right-handed alpha
Helix 11
AB2
A
275 281Right-handed alpha
Helix 12
AB3
A
284 294Right-handed alpha
Helix 13
AB4
A
304 329Right-handed alpha
Helix 14
AB5
A
339 362Right-handed alpha
Helix 15
AB6
A
365 387Right-handed alpha
Helix 16
AB7
A
391 410Right-handed alpha
Helix 17
AB8
A
412 418Right-handed alpha
Helix 18
AB9
B
37 57Right-handed alpha
Helix 19
AC1
B
71 82Right-handed alpha
Helix 20
AC2
B
84 103Right-handed alpha
Helix 21
AC3
B
117 131Right-handed alpha
Helix 22
AC4
B
158 163Right-handed alpha
Helix 23
AC5
B
205 216Right-handed alpha
Helix 24
AC6
B
228 230Right-handed 310
Helix 25
AC7
B
232 246Right-handed alpha
Helix 26
AC8
B
275 283Right-handed alpha
Helix 27
AC9
B
284 294Right-handed alpha
Helix 28
AD1
B
304 332Right-handed alpha
Helix 29
AD2
B
339 362Right-handed alpha
Helix 30
AD3
B
365 387Right-handed alpha
Helix 31
AD4
B
391 410Right-handed alpha
Helix 32
AD5
B
412 418Right-handed alpha
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There are 8 sheets in PDB entry 8QHP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
11 14anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
22 27parallel
Strand 3
A
220 226parallel
Strand 4
A
250 256parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
180 185anti-parallel
Strand 4
A
200 202anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 265first strand
Strand 2
A
259 261anti-parallel
Strand 3
A
301 302parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
11 14anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
22 27parallel
Strand 3
B
220 226parallel
Strand 4
B
250 256parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
140 143anti-parallel
Strand 3
B
180 185anti-parallel
Strand 4
B
200 202anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 265first strand
Strand 2
B
259 261anti-parallel
Strand 3
B
301 302parallel
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