Analysis of interatomic Contacts of Structural Units in PDB entry:
8QHQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QHQ entry

There are 5 chains in PDB entry 8QHQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 18PRO 162
B
 GLY 19ASP 161
C
 MET 18PRO 162
D
 ARG 20GLU 159
E
 ARG 20ASP 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8QHQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 47Right-handed alpha
Helix 2
AA2
A
54 59Right-handed 310
Helix 3
AA3
A
72 87Right-handed alpha
Helix 4
AA4
A
98 111Right-handed alpha
Helix 5
AA5
A
120 124Right-handed 310
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
146 148Right-handed 310
Helix 8
AA8
A
149 161Right-handed alpha
Helix 9
AA9
B
35 47Right-handed alpha
Helix 10
AB1
B
54 59Right-handed 310
Helix 11
AB2
B
72 87Right-handed alpha
Helix 12
AB3
B
98 111Right-handed alpha
Helix 13
AB4
B
120 124Right-handed 310
Helix 14
AB5
B
128 133Right-handed alpha
Helix 15
AB6
B
146 148Right-handed 310
Helix 16
AB7
B
149 161Right-handed alpha
Helix 17
AB8
C
35 47Right-handed alpha
Helix 18
AB9
C
54 59Right-handed 310
Helix 19
AC1
C
72 87Right-handed alpha
Helix 20
AC2
C
98 111Right-handed alpha
Helix 21
AC3
C
120 124Right-handed 310
Helix 22
AC4
C
128 133Right-handed alpha
Helix 23
AC5
C
146 148Right-handed 310
Helix 24
AC6
C
149 161Right-handed alpha
Helix 25
AC7
D
35 47Right-handed alpha
Helix 26
AC8
D
54 59Right-handed 310
Helix 27
AC9
D
73 87Right-handed alpha
Helix 28
AD1
D
98 111Right-handed alpha
Helix 29
AD2
D
120 124Right-handed 310
Helix 30
AD3
D
128 133Right-handed alpha
Helix 31
AD4
D
146 148Right-handed 310
Helix 32
AD5
D
149 159Right-handed alpha
Helix 33
AD6
E
35 47Right-handed alpha
Helix 34
AD7
E
54 59Right-handed 310
Helix 35
AD8
E
72 87Right-handed alpha
Helix 36
AD9
E
98 111Right-handed alpha
Helix 37
AE1
E
120 124Right-handed 310
Helix 38
AE2
E
128 133Right-handed alpha
Helix 39
AE3
E
146 148Right-handed 310
Helix 40
AE4
E
149 160Right-handed alpha
Helix 41
AE5
F
35 47Right-handed alpha
Helix 42
AE6
F
54 59Right-handed 310
Helix 43
AE7
F
72 87Right-handed alpha
Helix 44
AE8
F
98 111Right-handed alpha
Helix 45
AE9
F
120 124Right-handed 310
Helix 46
AF1
F
128 133Right-handed alpha
Helix 47
AF2
F
146 148Right-handed 310
Helix 48
AF3
F
149 160Right-handed alpha
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There are 6 sheets in PDB entry 8QHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
22 26parallel
Strand 3
A
89 93parallel
Strand 4
A
114 119parallel
Strand 5
A
140 144parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
22 26parallel
Strand 3
B
89 93parallel
Strand 4
B
114 119parallel
Strand 5
B
140 144parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
22 26parallel
Strand 3
C
89 93parallel
Strand 4
C
115 119parallel
Strand 5
C
140 144parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
51 52first strand
Strand 2
D
22 26parallel
Strand 3
D
89 93parallel
Strand 4
D
114 119parallel
Strand 5
D
140 144parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
51 52first strand
Strand 2
E
22 26parallel
Strand 3
E
89 93parallel
Strand 4
E
114 119parallel
Strand 5
E
140 144parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
51 52first strand
Strand 2
F
22 26parallel
Strand 3
F
89 93parallel
Strand 4
F
114 119parallel
Strand 5
F
140 144parallel
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