Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QJ0 entry

There are 12 chains in PDB entry 8QJ0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	MET 1	TYR 123
T	MET 1	TYR 123
U	MET 1	TYR 123
V	MET 1	TYR 123
L	TYR 20	THR 200
L	ASP 202	LYS 463
M	TYR 20	THR 200
M	ASP 202	LYS 463
N	TYR 20	THR 200
N	ASP 202	LYS 463
O	TYR 20	THR 200
O	ASP 202	LYS 463

There are104 helices in PDB entry 8QJ0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	22	36	Right-handed alpha
Helix 2	AA2	S	79	94	Right-handed alpha
Helix 3	AA3	T	22	36	Right-handed alpha
Helix 4	AA4	T	79	94	Right-handed alpha
Helix 5	AA5	U	22	36	Right-handed alpha
Helix 6	AA6	U	79	94	Right-handed alpha
Helix 7	AA7	V	22	36	Right-handed alpha
Helix 8	AA8	V	79	94	Right-handed alpha
Helix 9	AA9	L	21	25	Right-handed alpha
Helix 10	AB1	L	49	61	Right-handed alpha
Helix 11	AB2	L	69	75	Right-handed 310
Helix 12	AB3	L	76	80	Right-handed 310
Helix 13	AB4	L	104	108	Right-handed 310
Helix 14	AB5	L	112	122	Right-handed alpha
Helix 15	AB6	L	123	127	Right-handed 310
Helix 16	AB7	L	141	146	Right-handed alpha
Helix 17	AB8	L	154	163	Right-handed alpha
Helix 18	AB9	L	181	195	Right-handed alpha
Helix 19	AC1	L	213	233	Right-handed alpha
Helix 20	AC2	L	246	261	Right-handed alpha
Helix 21	AC3	L	269	273	Right-handed alpha
Helix 22	AC4	L	273	288	Right-handed alpha
Helix 23	AC5	L	297	303	Right-handed alpha
Helix 24	AC6	L	310	322	Right-handed alpha
Helix 25	AC7	L	339	351	Right-handed alpha
Helix 26	AC8	L	357	361	Right-handed 310
Helix 27	AC9	L	383	385	Right-handed 310
Helix 28	AD1	L	386	395	Right-handed alpha
Helix 29	AD2	L	403	408	Right-handed alpha
Helix 30	AD3	L	412	433	Right-handed alpha
Helix 31	AD4	L	436	450	Right-handed alpha
Helix 32	AD5	L	452	462	Right-handed alpha
Helix 33	AD6	M	21	25	Right-handed alpha
Helix 34	AD7	M	49	61	Right-handed alpha
Helix 35	AD8	M	69	75	Right-handed 310
Helix 36	AD9	M	76	80	Right-handed 310
Helix 37	AE1	M	104	108	Right-handed 310
Helix 38	AE2	M	112	122	Right-handed alpha
Helix 39	AE3	M	123	127	Right-handed 310
Helix 40	AE4	M	141	146	Right-handed alpha
Helix 41	AE5	M	154	163	Right-handed alpha
Helix 42	AE6	M	181	195	Right-handed alpha
Helix 43	AE7	M	213	233	Right-handed alpha
Helix 44	AE8	M	246	261	Right-handed alpha
Helix 45	AE9	M	269	273	Right-handed alpha
Helix 46	AF1	M	273	288	Right-handed alpha
Helix 47	AF2	M	297	303	Right-handed alpha
Helix 48	AF3	M	310	322	Right-handed alpha
Helix 49	AF4	M	339	351	Right-handed alpha
Helix 50	AF5	M	357	361	Right-handed 310
Helix 51	AF6	M	383	385	Right-handed 310
Helix 52	AF7	M	386	395	Right-handed alpha
Helix 53	AF8	M	403	408	Right-handed alpha
Helix 54	AF9	M	412	433	Right-handed alpha
Helix 55	AG1	M	436	450	Right-handed alpha
Helix 56	AG2	M	452	462	Right-handed alpha
Helix 57	AG3	N	21	25	Right-handed alpha
Helix 58	AG4	N	49	61	Right-handed alpha
Helix 59	AG5	N	69	75	Right-handed 310
Helix 60	AG6	N	76	80	Right-handed 310
Helix 61	AG7	N	104	108	Right-handed 310
Helix 62	AG8	N	112	122	Right-handed alpha
Helix 63	AG9	N	123	127	Right-handed 310
Helix 64	AH1	N	141	146	Right-handed alpha
Helix 65	AH2	N	154	163	Right-handed alpha
Helix 66	AH3	N	181	195	Right-handed alpha
Helix 67	AH4	N	213	233	Right-handed alpha
Helix 68	AH5	N	246	261	Right-handed alpha
Helix 69	AH6	N	269	273	Right-handed alpha
Helix 70	AH7	N	273	288	Right-handed alpha
Helix 71	AH8	N	298	303	Right-handed alpha
Helix 72	AH9	N	310	322	Right-handed alpha
Helix 73	AI1	N	339	351	Right-handed alpha
Helix 74	AI2	N	357	361	Right-handed 310
Helix 75	AI3	N	383	385	Right-handed 310
Helix 76	AI4	N	386	395	Right-handed alpha
Helix 77	AI5	N	403	408	Right-handed alpha
Helix 78	AI6	N	412	433	Right-handed alpha
Helix 79	AI7	N	436	450	Right-handed alpha
Helix 80	AI8	N	452	462	Right-handed alpha
Helix 81	AI9	O	21	25	Right-handed alpha
Helix 82	AJ1	O	49	61	Right-handed alpha
Helix 83	AJ2	O	69	75	Right-handed 310
Helix 84	AJ3	O	76	80	Right-handed 310
Helix 85	AJ4	O	104	108	Right-handed 310
Helix 86	AJ5	O	112	122	Right-handed alpha
Helix 87	AJ6	O	123	127	Right-handed 310
Helix 88	AJ7	O	141	146	Right-handed alpha
Helix 89	AJ8	O	154	163	Right-handed alpha
Helix 90	AJ9	O	181	195	Right-handed alpha
Helix 91	AK1	O	213	233	Right-handed alpha
Helix 92	AK2	O	246	261	Right-handed alpha
Helix 93	AK3	O	269	273	Right-handed alpha
Helix 94	AK4	O	273	288	Right-handed alpha
Helix 95	AK5	O	297	303	Right-handed alpha
Helix 96	AK6	O	310	322	Right-handed alpha
Helix 97	AK7	O	339	351	Right-handed alpha
Helix 98	AK8	O	357	361	Right-handed 310
Helix 99	AK9	O	383	385	Right-handed 310
Helix 100	AL1	O	386	395	Right-handed alpha
Helix 101	AL2	O	403	408	Right-handed alpha
Helix 102	AL3	O	412	433	Right-handed alpha
Helix 103	AL4	O	436	450	Right-handed alpha
Helix 104	AL5	O	452	462	Right-handed alpha

There are 16 sheets in PDB entry 8QJ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	68	70	first strand
Strand 2	S	39	45	anti-parallel
Strand 3	S	98	105	anti-parallel
Strand 4	S	110	118	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	68	70	first strand
Strand 2	T	39	45	anti-parallel
Strand 3	T	98	105	anti-parallel
Strand 4	T	110	118	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	68	70	first strand
Strand 2	U	39	45	anti-parallel
Strand 3	U	98	105	anti-parallel
Strand 4	U	110	118	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	68	70	first strand
Strand 2	V	39	45	anti-parallel
Strand 3	V	98	105	anti-parallel
Strand 4	V	110	118	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	83	89	first strand
Strand 2	L	97	103	anti-parallel
Strand 3	L	36	44	anti-parallel
Strand 4	L	130	139	anti-parallel
Strand 5	L	308	309	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	169	173	first strand
Strand 2	L	199	201	parallel
Strand 3	L	237	241	parallel
Strand 4	L	264	268	parallel
Strand 5	L	290	294	parallel
Strand 6	L	325	327	parallel
Strand 7	L	375	378	parallel
Strand 8	L	399	402	parallel
Strand 9	L	169	173	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	353	354	first strand
Strand 2	L	366	367	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	83	89	first strand
Strand 2	M	97	103	anti-parallel
Strand 3	M	36	44	anti-parallel
Strand 4	M	130	139	anti-parallel
Strand 5	M	308	309	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	169	173	first strand
Strand 2	M	199	201	parallel
Strand 3	M	237	241	parallel
Strand 4	M	264	268	parallel
Strand 5	M	290	294	parallel
Strand 6	M	325	327	parallel
Strand 7	M	375	378	parallel
Strand 8	M	399	401	parallel
Strand 9	M	169	173	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	353	354	first strand
Strand 2	M	366	367	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	83	89	first strand
Strand 2	N	97	103	anti-parallel
Strand 3	N	36	44	anti-parallel
Strand 4	N	130	139	anti-parallel
Strand 5	N	308	309	parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	173	first strand
Strand 2	N	199	201	parallel
Strand 3	N	237	241	parallel
Strand 4	N	264	268	parallel
Strand 5	N	290	294	parallel
Strand 6	N	325	327	parallel
Strand 7	N	375	378	parallel
Strand 8	N	399	401	parallel
Strand 9	N	169	173	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	353	354	first strand
Strand 2	N	366	367	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	89	first strand
Strand 2	O	97	103	anti-parallel
Strand 3	O	36	44	anti-parallel
Strand 4	O	130	139	anti-parallel
Strand 5	O	308	309	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	169	173	first strand
Strand 2	O	199	201	parallel
Strand 3	O	237	241	parallel
Strand 4	O	264	268	parallel
Strand 5	O	290	294	parallel
Strand 6	O	325	327	parallel
Strand 7	O	375	378	parallel
Strand 8	O	399	401	parallel
Strand 9	O	169	173	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	353	354	first strand
Strand 2	O	366	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QJ0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ0