Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QJ1 entry

There are 15 chains in PDB entry 8QJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2TYR 37
B
 CYS 2TYR 37
C
 CYS 2TYR 37
D
 CYS 2TYR 37
E
 CYS 2TYR 37
F
 CYS 2TYR 37
G
 CYS 2TYR 37
H
 CYS 2TYR 37
I
 CYS 2TYR 37
J
 CYS 2TYR 37
K
 CYS 2TYR 37
L
 CYS 2TYR 37
M
 CYS 2TYR 37
N
 CYS 2TYR 37
O
 CYS 2TYR 37
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page
There are no helices in PDB entry 8QJ1

There are 6 sheets in PDB entry 8QJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
D
12 22parallel
Strand 3
G
12 22parallel
Strand 4
J
12 22parallel
Strand 5
M
12 22parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
D
26 27parallel
Strand 3
G
26 27parallel
Strand 4
J
26 27parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 20first strand
Strand 2
E
12 22parallel
Strand 3
H
12 22parallel
Strand 4
K
12 22parallel
Strand 5
N
12 22parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
E
26 27parallel
Strand 3
H
26 27parallel
Strand 4
K
26 27parallel
Strand 5
N
26 27parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 22first strand
Strand 2
F
12 22parallel
Strand 3
I
12 22parallel
Strand 4
L
12 22parallel
Strand 5
O
12 22parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
F
26 27parallel
Strand 3
I
26 27parallel
Strand 4
L
26 27parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il