Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QJ2 entry

There are 6 chains in PDB entry 8QJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 13	LEU 394
C	GLU 3	ASN 340
G	ILE 9	ARG 62
N	GLN 1	VAL 126
A	GLY 39	THR 312
D	VAL 2	GLN 111

There are 22 helices in PDB entry 8QJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	13	39	Right-handed alpha
Helix 2	AA2	B	233	238	Right-handed 310
Helix 3	AA3	B	264	278	Right-handed alpha
Helix 4	AA4	B	296	300	Right-handed 310
Helix 5	AA5	B	333	351	Right-handed alpha
Helix 6	AA6	B	370	391	Right-handed alpha
Helix 7	AA7	C	4	25	Right-handed alpha
Helix 8	AA8	G	10	23	Right-handed alpha
Helix 9	AA9	G	29	43	Right-handed alpha
Helix 10	AB1	G	44	48	Right-handed 310
Helix 11	AB2	A	52	72	Right-handed alpha
Helix 12	AB3	A	77	103	Right-handed alpha
Helix 13	AB4	A	104	106	Right-handed 310
Helix 14	AB5	A	122	153	Right-handed alpha
Helix 15	AB6	A	156	161	Right-handed alpha
Helix 16	AB7	A	162	187	Right-handed alpha
Helix 17	AB8	A	193	225	Right-handed alpha
Helix 18	AB9	A	241	271	Right-handed alpha
Helix 19	AC1	A	274	281	Right-handed alpha
Helix 20	AC2	A	283	302	Right-handed alpha
Helix 21	AC3	A	303	305	Right-handed 310
Helix 22	AC4	A	306	312	Right-handed alpha

There are 13 sheets in PDB entry 8QJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	213	first strand
Strand 2	B	218	224	anti-parallel
Strand 3	B	40	48	parallel
Strand 4	B	243	248	parallel
Strand 5	B	286	290	parallel
Strand 6	B	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	105	first strand
Strand 2	C	111	115	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	151	first strand
Strand 2	C	156	160	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	249	254	anti-parallel
Strand 4	C	260	265	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	21	25	anti-parallel
Strand 3	N	78	79	anti-parallel
Strand 4	N	72	73	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	19	first strand
Strand 2	N	82	83	anti-parallel
Strand 3	N	68	69	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	59	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	23	first strand
Strand 2	D	77	80	anti-parallel
Strand 3	D	69	70	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	33	36	anti-parallel
Strand 3	D	95	99	anti-parallel
Strand 4	D	106	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ2