Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QJ4 entry

There are 2 chains in PDB entry 8QJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3SER 404
B
 GLU 3SER 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8QJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 32Right-handed alpha
Helix 2
AA2
A
34 59Right-handed alpha
Helix 3
AA3
A
59 66Right-handed alpha
Helix 4
AA4
A
87 105Right-handed alpha
Helix 5
AA5
A
106 111Right-handed alpha
Helix 6
AA6
A
115 129Right-handed alpha
Helix 7
AA7
A
129 140Right-handed alpha
Helix 8
AA8
A
152 157Right-handed alpha
Helix 9
AA9
A
168 184Right-handed alpha
Helix 10
AB1
A
203 224Right-handed alpha
Helix 11
AB2
A
232 259Right-handed alpha
Helix 12
AB3
A
262 279Right-handed alpha
Helix 13
AB4
A
286 311Right-handed alpha
Helix 14
AB5
A
318 338Right-handed alpha
Helix 15
AB6
A
339 343Right-handed 310
Helix 16
AB7
A
348 368Right-handed alpha
Helix 17
AB8
A
368 382Right-handed alpha
Helix 18
AB9
A
387 394Right-handed alpha
Helix 19
AC1
A
395 398Right-handed 310
Helix 20
AC2
B
4 32Right-handed alpha
Helix 21
AC3
B
34 59Right-handed alpha
Helix 22
AC4
B
59 66Right-handed alpha
Helix 23
AC5
B
87 105Right-handed alpha
Helix 24
AC6
B
106 109Right-handed 310
Helix 25
AC7
B
115 129Right-handed alpha
Helix 26
AC8
B
129 140Right-handed alpha
Helix 27
AC9
B
152 157Right-handed alpha
Helix 28
AD1
B
168 184Right-handed alpha
Helix 29
AD2
B
203 224Right-handed alpha
Helix 30
AD3
B
232 259Right-handed alpha
Helix 31
AD4
B
262 279Right-handed alpha
Helix 32
AD5
B
286 311Right-handed alpha
Helix 33
AD6
B
318 338Right-handed alpha
Helix 34
AD7
B
339 343Right-handed 310
Helix 35
AD8
B
348 368Right-handed alpha
Helix 36
AD9
B
368 382Right-handed alpha
Helix 37
AE1
B
387 394Right-handed alpha
Helix 38
AE2
B
395 398Right-handed 310
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There are 4 sheets in PDB entry 8QJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
73 74anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
195 196anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 69first strand
Strand 2
B
73 74anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
195 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il