Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QJ5 entry

There are 2 chains in PDB entry 8QJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 20	SER 431
B	TYR 22	SER 431

There are 17 helices in PDB entry 8QJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed alpha
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	93	97	Right-handed 310
Helix 4	AA4	A	104	111	Right-handed alpha
Helix 5	AA5	A	112	116	Right-handed 310
Helix 6	AA6	A	249	254	Right-handed alpha
Helix 7	AA7	A	265	269	Right-handed 310
Helix 8	AA8	A	321	325	Right-handed 310
Helix 9	AA9	A	388	390	Right-handed 310
Helix 10	AB1	B	28	33	Right-handed alpha
Helix 11	AB2	B	39	43	Right-handed 310
Helix 12	AB3	B	93	97	Right-handed 310
Helix 13	AB4	B	104	111	Right-handed alpha
Helix 14	AB5	B	112	116	Right-handed 310
Helix 15	AB6	B	249	254	Right-handed alpha
Helix 16	AB7	B	265	269	Right-handed 310
Helix 17	AB8	B	321	325	Right-handed 310

There are 18 sheets in PDB entry 8QJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	286	294	parallel
Strand 3	A	271	278	anti-parallel
Strand 4	A	231	238	anti-parallel
Strand 5	A	218	224	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	65	first strand
Strand 2	A	79	88	anti-parallel
Strand 3	A	117	123	anti-parallel
Strand 4	A	130	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	65	first strand
Strand 2	A	79	88	anti-parallel
Strand 3	A	74	76	anti-parallel
Strand 4	A	426	428	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	153	first strand
Strand 2	A	159	167	anti-parallel
Strand 3	A	171	183	anti-parallel
Strand 4	A	186	190	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	153	first strand
Strand 2	A	159	167	anti-parallel
Strand 3	A	171	183	anti-parallel
Strand 4	A	195	200	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	310	first strand
Strand 2	A	313	320	anti-parallel
Strand 3	A	334	340	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	310	first strand
Strand 2	A	313	320	anti-parallel
Strand 3	A	334	340	anti-parallel
Strand 4	A	355	358	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	377	387	anti-parallel
Strand 3	A	391	398	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	377	387	anti-parallel
Strand 3	A	400	407	anti-parallel
Strand 4	A	410	419	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	286	294	parallel
Strand 3	B	271	278	anti-parallel
Strand 4	B	231	238	anti-parallel
Strand 5	B	218	224	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	65	first strand
Strand 2	B	80	88	anti-parallel
Strand 3	B	117	123	anti-parallel
Strand 4	B	130	134	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	426	428	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	153	first strand
Strand 2	B	159	167	anti-parallel
Strand 3	B	171	183	anti-parallel
Strand 4	B	186	190	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	153	first strand
Strand 2	B	159	167	anti-parallel
Strand 3	B	171	183	anti-parallel
Strand 4	B	195	200	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	310	first strand
Strand 2	B	313	320	anti-parallel
Strand 3	B	334	340	anti-parallel
Strand 4	B	348	349	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	310	first strand
Strand 2	B	313	320	anti-parallel
Strand 3	B	334	340	anti-parallel
Strand 4	B	355	358	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	377	387	anti-parallel
Strand 3	B	391	398	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	377	387	anti-parallel
Strand 3	B	400	407	anti-parallel
Strand 4	B	410	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJ5