Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QJA entry

There are 2 chains in PDB entry 8QJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 23LEU 1076
B
ALA 23ALA 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8QJA. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
363 365Right-handed 310
Helix 2
AA2
A
1052 1056Right-handed 310
Helix 3
AA3
B
363 365Right-handed 310
Helix 4
AA4
B
1052 1056Right-handed 310
Helix 5
AA5
C
363 365Right-handed 310
Helix 6
AA6
C
1052 1056Right-handed 310
Helix 7
AA7
D
363 365Right-handed 310
Helix 8
AA8
D
1052 1056Right-handed 310
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There are 21 sheets in PDB entry 8QJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
46 52first strand
Strand 2
A
58 64anti-parallel
Strand 3
A
81 83anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 109first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
88 91anti-parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
144 149anti-parallel
Strand 6
A
134 138anti-parallel
Strand 7
A
125 131anti-parallel
Strand 8
A
117 120anti-parallel
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There are 64 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
106 109first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
88 91anti-parallel
Strand 4
A
154 160anti-parallel
Strand 5
A
166 171anti-parallel
Strand 6
A
178 182anti-parallel
Strand 7
A
187 192anti-parallel
Strand 8
A
198 205anti-parallel
Strand 9
A
213 222anti-parallel
Strand 10
A
228 232anti-parallel
Strand 11
A
238 244anti-parallel
Strand 12
A
247 252anti-parallel
Strand 13
A
258 263anti-parallel
Strand 14
A
272 277anti-parallel
Strand 15
A
284 289anti-parallel
Strand 16
A
294 298anti-parallel
Strand 17
A
304 309anti-parallel
Strand 18
A
315 319anti-parallel
Strand 19
A
325 330anti-parallel
Strand 20
A
336 340anti-parallel
Strand 21
A
346 351anti-parallel
Strand 22
A
357 361anti-parallel
Strand 23
A
367 372anti-parallel
Strand 24
A
378 382anti-parallel
Strand 25
A
388 393anti-parallel
Strand 26
A
399 403anti-parallel
Strand 27
A
409 414anti-parallel
Strand 28
A
420 424anti-parallel
Strand 29
A
430 435anti-parallel
Strand 30
A
441 445anti-parallel
Strand 31
A
451 456anti-parallel
Strand 32
A
462 466anti-parallel
Strand 33
A
472 477anti-parallel
Strand 34
A
483 487anti-parallel
Strand 35
A
493 498anti-parallel
Strand 36
A
504 508anti-parallel
Strand 37
A
514 519anti-parallel
Strand 38
A
525 529anti-parallel
Strand 39
A
535 540anti-parallel
Strand 40
A
546 550anti-parallel
Strand 41
A
556 561anti-parallel
Strand 42
A
567 571anti-parallel
Strand 43
A
577 582anti-parallel
Strand 44
A
589 593anti-parallel
Strand 45
A
599 603anti-parallel
Strand 46
A
609 614anti-parallel
Strand 47
A
617 623anti-parallel
Strand 48
A
629 634anti-parallel
Strand 49
A
637 643anti-parallel
Strand 50
A
649 658anti-parallel
Strand 51
A
661 671anti-parallel
Strand 52
A
677 681anti-parallel
Strand 53
A
687 693anti-parallel
Strand 54
A
697 703anti-parallel
Strand 55
A
706 713anti-parallel
Strand 56
A
719 724anti-parallel
Strand 57
A
728 734anti-parallel
Strand 58
A
740 747anti-parallel
Strand 59
A
755 762anti-parallel
Strand 60
A
768 773anti-parallel
Strand 61
A
778 783anti-parallel
Strand 62
A
789 794anti-parallel
Strand 63
A
797 803anti-parallel
Strand 64
A
809 814anti-parallel
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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
838 839first strand
Strand 2
A
842 846anti-parallel
Strand 3
A
852 857anti-parallel
Strand 4
A
860 866anti-parallel
Strand 5
A
872 879anti-parallel
Strand 6
A
885 892anti-parallel
Strand 7
A
898 905anti-parallel
Strand 8
A
910 918anti-parallel
Strand 9
A
921 929anti-parallel
Strand 10
A
932 940anti-parallel
Strand 11
A
947 951anti-parallel
Strand 12
A
968 973anti-parallel
Strand 13
A
979 983anti-parallel
Strand 14
A
989 992anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1018 1019first strand
Strand 2
A
1023 1025anti-parallel
Strand 3
A
1032 1034anti-parallel
Strand 4
A
1037 1039anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 52first strand
Strand 2
B
58 64anti-parallel
Strand 3
B
81 83anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
106 109first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
154 161anti-parallel
Strand 5
B
143 149anti-parallel
Strand 6
B
134 138anti-parallel
Strand 7
B
125 131anti-parallel
Strand 8
B
117 120anti-parallel
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There are 64 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
106 109first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
88 92anti-parallel
Strand 4
B
154 161anti-parallel
Strand 5
B
166 171anti-parallel
Strand 6
B
178 182anti-parallel
Strand 7
B
187 192anti-parallel
Strand 8
B
198 204anti-parallel
Strand 9
B
214 222anti-parallel
Strand 10
B
228 232anti-parallel
Strand 11
B
238 244anti-parallel
Strand 12
B
247 252anti-parallel
Strand 13
B
258 263anti-parallel
Strand 14
B
272 277anti-parallel
Strand 15
B
284 289anti-parallel
Strand 16
B
294 298anti-parallel
Strand 17
B
304 309anti-parallel
Strand 18
B
315 319anti-parallel
Strand 19
B
325 330anti-parallel
Strand 20
B
336 340anti-parallel
Strand 21
B
346 351anti-parallel
Strand 22
B
357 361anti-parallel
Strand 23
B
367 372anti-parallel
Strand 24
B
378 382anti-parallel
Strand 25
B
388 393anti-parallel
Strand 26
B
399 403anti-parallel
Strand 27
B
409 414anti-parallel
Strand 28
B
420 424anti-parallel
Strand 29
B
430 435anti-parallel
Strand 30
B
441 445anti-parallel
Strand 31
B
451 456anti-parallel
Strand 32
B
462 466anti-parallel
Strand 33
B
472 477anti-parallel
Strand 34
B
483 487anti-parallel
Strand 35
B
493 498anti-parallel
Strand 36
B
504 508anti-parallel
Strand 37
B
514 519anti-parallel
Strand 38
B
525 529anti-parallel
Strand 39
B
535 540anti-parallel
Strand 40
B
546 550anti-parallel
Strand 41
B
556 561anti-parallel
Strand 42
B
567 571anti-parallel
Strand 43
B
577 582anti-parallel
Strand 44
B
589 594anti-parallel
Strand 45
B
598 603anti-parallel
Strand 46
B
609 614anti-parallel
Strand 47
B
617 623anti-parallel
Strand 48
B
629 633anti-parallel
Strand 49
B
637 643anti-parallel
Strand 50
B
649 658anti-parallel
Strand 51
B
661 671anti-parallel
Strand 52
B
677 681anti-parallel
Strand 53
B
687 693anti-parallel
Strand 54
B
697 703anti-parallel
Strand 55
B
707 713anti-parallel
Strand 56
B
719 724anti-parallel
Strand 57
B
728 734anti-parallel
Strand 58
B
740 747anti-parallel
Strand 59
B
755 762anti-parallel
Strand 60
B
768 773anti-parallel
Strand 61
B
777 783anti-parallel
Strand 62
B
789 794anti-parallel
Strand 63
B
797 803anti-parallel
Strand 64
B
809 813anti-parallel
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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
838 839first strand
Strand 2
B
842 846anti-parallel
Strand 3
B
852 857anti-parallel
Strand 4
B
860 866anti-parallel
Strand 5
B
872 879anti-parallel
Strand 6
B
884 892anti-parallel
Strand 7
B
898 905anti-parallel
Strand 8
B
910 918anti-parallel
Strand 9
B
921 929anti-parallel
Strand 10
B
932 940anti-parallel
Strand 11
B
947 951anti-parallel
Strand 12
B
968 973anti-parallel
Strand 13
B
979 983anti-parallel
Strand 14
B
989 992anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1018 1019first strand
Strand 2
B
1023 1025anti-parallel
Strand 3
B
1032 1033anti-parallel
Strand 4
B
1038 1039anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
46 52first strand
Strand 2
C
58 64anti-parallel
Strand 3
C
81 83anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
106 109first strand
Strand 2
C
96 100anti-parallel
Strand 3
C
88 92anti-parallel
Strand 4
C
154 160anti-parallel
Strand 5
C
144 149anti-parallel
Strand 6
C
134 138anti-parallel
Strand 7
C
125 131anti-parallel
Strand 8
C
117 120anti-parallel
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There are 64 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
106 109first strand
Strand 2
C
96 100anti-parallel
Strand 3
C
88 92anti-parallel
Strand 4
C
154 160anti-parallel
Strand 5
C
166 171anti-parallel
Strand 6
C
178 182anti-parallel
Strand 7
C
187 192anti-parallel
Strand 8
C
198 204anti-parallel
Strand 9
C
214 222anti-parallel
Strand 10
C
228 232anti-parallel
Strand 11
C
238 244anti-parallel
Strand 12
C
247 252anti-parallel
Strand 13
C
258 263anti-parallel
Strand 14
C
272 277anti-parallel
Strand 15
C
284 289anti-parallel
Strand 16
C
294 298anti-parallel
Strand 17
C
304 309anti-parallel
Strand 18
C
315 319anti-parallel
Strand 19
C
325 330anti-parallel
Strand 20
C
336 340anti-parallel
Strand 21
C
346 351anti-parallel
Strand 22
C
357 361anti-parallel
Strand 23
C
367 372anti-parallel
Strand 24
C
378 382anti-parallel
Strand 25
C
388 393anti-parallel
Strand 26
C
399 403anti-parallel
Strand 27
C
409 414anti-parallel
Strand 28
C
420 424anti-parallel
Strand 29
C
430 435anti-parallel
Strand 30
C
441 445anti-parallel
Strand 31
C
451 456anti-parallel
Strand 32
C
462 466anti-parallel
Strand 33
C
472 477anti-parallel
Strand 34
C
483 487anti-parallel
Strand 35
C
493 498anti-parallel
Strand 36
C
504 508anti-parallel
Strand 37
C
514 519anti-parallel
Strand 38
C
525 529anti-parallel
Strand 39
C
535 540anti-parallel
Strand 40
C
546 550anti-parallel
Strand 41
C
556 561anti-parallel
Strand 42
C
567 571anti-parallel
Strand 43
C
577 582anti-parallel
Strand 44
C
589 594anti-parallel
Strand 45
C
597 603anti-parallel
Strand 46
C
609 614anti-parallel
Strand 47
C
617 623anti-parallel
Strand 48
C
629 633anti-parallel
Strand 49
C
637 643anti-parallel
Strand 50
C
649 658anti-parallel
Strand 51
C
661 671anti-parallel
Strand 52
C
677 681anti-parallel
Strand 53
C
687 693anti-parallel
Strand 54
C
697 703anti-parallel
Strand 55
C
706 713anti-parallel
Strand 56
C
719 724anti-parallel
Strand 57
C
729 734anti-parallel
Strand 58
C
740 746anti-parallel
Strand 59
C
754 762anti-parallel
Strand 60
C
768 773anti-parallel
Strand 61
C
778 783anti-parallel
Strand 62
C
789 794anti-parallel
Strand 63
C
799 803anti-parallel
Strand 64
C
809 814anti-parallel
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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
838 839first strand
Strand 2
C
842 846anti-parallel
Strand 3
C
852 857anti-parallel
Strand 4
C
860 866anti-parallel
Strand 5
C
872 879anti-parallel
Strand 6
C
885 892anti-parallel
Strand 7
C
898 905anti-parallel
Strand 8
C
910 918anti-parallel
Strand 9
C
921 929anti-parallel
Strand 10
C
932 940anti-parallel
Strand 11
C
947 951anti-parallel
Strand 12
C
968 973anti-parallel
Strand 13
C
979 983anti-parallel
Strand 14
C
989 992anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
994 995first strand
Strand 2
C
1001 1003anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1018 1019first strand
Strand 2
C
1023 1025anti-parallel
Strand 3
C
1032 1033anti-parallel
Strand 4
C
1038 1039anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
46 52first strand
Strand 2
D
58 64anti-parallel
Strand 3
D
81 83anti-parallel
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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
106 109first strand
Strand 2
D
96 100anti-parallel
Strand 3
D
88 92anti-parallel
Strand 4
D
154 160anti-parallel
Strand 5
D
144 149anti-parallel
Strand 6
D
134 138anti-parallel
Strand 7
D
126 131anti-parallel
Strand 8
D
117 119anti-parallel
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There are 64 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
106 109first strand
Strand 2
D
96 100anti-parallel
Strand 3
D
88 92anti-parallel
Strand 4
D
154 160anti-parallel
Strand 5
D
166 171anti-parallel
Strand 6
D
178 182anti-parallel
Strand 7
D
187 192anti-parallel
Strand 8
D
198 206anti-parallel
Strand 9
D
212 222anti-parallel
Strand 10
D
228 232anti-parallel
Strand 11
D
238 244anti-parallel
Strand 12
D
247 252anti-parallel
Strand 13
D
258 263anti-parallel
Strand 14
D
272 277anti-parallel
Strand 15
D
284 288anti-parallel
Strand 16
D
294 299anti-parallel
Strand 17
D
304 309anti-parallel
Strand 18
D
315 319anti-parallel
Strand 19
D
325 330anti-parallel
Strand 20
D
336 340anti-parallel
Strand 21
D
346 351anti-parallel
Strand 22
D
357 361anti-parallel
Strand 23
D
367 372anti-parallel
Strand 24
D
378 382anti-parallel
Strand 25
D
388 393anti-parallel
Strand 26
D
399 403anti-parallel
Strand 27
D
409 414anti-parallel
Strand 28
D
420 424anti-parallel
Strand 29
D
430 435anti-parallel
Strand 30
D
441 445anti-parallel
Strand 31
D
451 456anti-parallel
Strand 32
D
462 466anti-parallel
Strand 33
D
472 477anti-parallel
Strand 34
D
483 487anti-parallel
Strand 35
D
493 498anti-parallel
Strand 36
D
504 508anti-parallel
Strand 37
D
514 519anti-parallel
Strand 38
D
525 529anti-parallel
Strand 39
D
535 540anti-parallel
Strand 40
D
546 550anti-parallel
Strand 41
D
556 561anti-parallel
Strand 42
D
567 571anti-parallel
Strand 43
D
577 582anti-parallel
Strand 44
D
589 593anti-parallel
Strand 45
D
598 603anti-parallel
Strand 46
D
609 614anti-parallel
Strand 47
D
617 623anti-parallel
Strand 48
D
629 633anti-parallel
Strand 49
D
637 643anti-parallel
Strand 50
D
649 658anti-parallel
Strand 51
D
661 671anti-parallel
Strand 52
D
677 681anti-parallel
Strand 53
D
687 691anti-parallel
Strand 54
D
700 703anti-parallel
Strand 55
D
706 713anti-parallel
Strand 56
D
719 724anti-parallel
Strand 57
D
729 734anti-parallel
Strand 58
D
740 746anti-parallel
Strand 59
D
755 762anti-parallel
Strand 60
D
768 773anti-parallel
Strand 61
D
778 783anti-parallel
Strand 62
D
789 793anti-parallel
Strand 63
D
798 803anti-parallel
Strand 64
D
809 814anti-parallel
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There are 14 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
838 839first strand
Strand 2
D
842 846anti-parallel
Strand 3
D
852 857anti-parallel
Strand 4
D
860 866anti-parallel
Strand 5
D
872 879anti-parallel
Strand 6
D
885 892anti-parallel
Strand 7
D
898 905anti-parallel
Strand 8
D
910 918anti-parallel
Strand 9
D
921 929anti-parallel
Strand 10
D
932 940anti-parallel
Strand 11
D
947 951anti-parallel
Strand 12
D
968 973anti-parallel
Strand 13
D
979 983anti-parallel
Strand 14
D
989 992anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1018 1019first strand
Strand 2
D
1023 1025anti-parallel
Strand 3
D
1032 1033anti-parallel
Strand 4
D
1038 1039anti-parallel
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