Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QJA entry

There are 2 chains in PDB entry 8QJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 23	LEU 1076
B	ALA 23	ALA 225

There are 8 helices in PDB entry 8QJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	363	365	Right-handed 310
Helix 2	AA2	A	1052	1056	Right-handed 310
Helix 3	AA3	B	363	365	Right-handed 310
Helix 4	AA4	B	1052	1056	Right-handed 310
Helix 5	AA5	C	363	365	Right-handed 310
Helix 6	AA6	C	1052	1056	Right-handed 310
Helix 7	AA7	D	363	365	Right-handed 310
Helix 8	AA8	D	1052	1056	Right-handed 310

There are 21 sheets in PDB entry 8QJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	52	first strand
Strand 2	A	58	64	anti-parallel
Strand 3	A	81	83	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	97	100	anti-parallel
Strand 3	A	88	91	anti-parallel
Strand 4	A	154	160	anti-parallel
Strand 5	A	144	149	anti-parallel
Strand 6	A	134	138	anti-parallel
Strand 7	A	125	131	anti-parallel
Strand 8	A	117	120	anti-parallel

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There are 64 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	97	100	anti-parallel
Strand 3	A	88	91	anti-parallel
Strand 4	A	154	160	anti-parallel
Strand 5	A	166	171	anti-parallel
Strand 6	A	178	182	anti-parallel
Strand 7	A	187	192	anti-parallel
Strand 8	A	198	205	anti-parallel
Strand 9	A	213	222	anti-parallel
Strand 10	A	228	232	anti-parallel
Strand 11	A	238	244	anti-parallel
Strand 12	A	247	252	anti-parallel
Strand 13	A	258	263	anti-parallel
Strand 14	A	272	277	anti-parallel
Strand 15	A	284	289	anti-parallel
Strand 16	A	294	298	anti-parallel
Strand 17	A	304	309	anti-parallel
Strand 18	A	315	319	anti-parallel
Strand 19	A	325	330	anti-parallel
Strand 20	A	336	340	anti-parallel
Strand 21	A	346	351	anti-parallel
Strand 22	A	357	361	anti-parallel
Strand 23	A	367	372	anti-parallel
Strand 24	A	378	382	anti-parallel
Strand 25	A	388	393	anti-parallel
Strand 26	A	399	403	anti-parallel
Strand 27	A	409	414	anti-parallel
Strand 28	A	420	424	anti-parallel
Strand 29	A	430	435	anti-parallel
Strand 30	A	441	445	anti-parallel
Strand 31	A	451	456	anti-parallel
Strand 32	A	462	466	anti-parallel
Strand 33	A	472	477	anti-parallel
Strand 34	A	483	487	anti-parallel
Strand 35	A	493	498	anti-parallel
Strand 36	A	504	508	anti-parallel
Strand 37	A	514	519	anti-parallel
Strand 38	A	525	529	anti-parallel
Strand 39	A	535	540	anti-parallel
Strand 40	A	546	550	anti-parallel
Strand 41	A	556	561	anti-parallel
Strand 42	A	567	571	anti-parallel
Strand 43	A	577	582	anti-parallel
Strand 44	A	589	593	anti-parallel
Strand 45	A	599	603	anti-parallel
Strand 46	A	609	614	anti-parallel
Strand 47	A	617	623	anti-parallel
Strand 48	A	629	634	anti-parallel
Strand 49	A	637	643	anti-parallel
Strand 50	A	649	658	anti-parallel
Strand 51	A	661	671	anti-parallel
Strand 52	A	677	681	anti-parallel
Strand 53	A	687	693	anti-parallel
Strand 54	A	697	703	anti-parallel
Strand 55	A	706	713	anti-parallel
Strand 56	A	719	724	anti-parallel
Strand 57	A	728	734	anti-parallel
Strand 58	A	740	747	anti-parallel
Strand 59	A	755	762	anti-parallel
Strand 60	A	768	773	anti-parallel
Strand 61	A	778	783	anti-parallel
Strand 62	A	789	794	anti-parallel
Strand 63	A	797	803	anti-parallel
Strand 64	A	809	814	anti-parallel

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There are 14 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	839	first strand
Strand 2	A	842	846	anti-parallel
Strand 3	A	852	857	anti-parallel
Strand 4	A	860	866	anti-parallel
Strand 5	A	872	879	anti-parallel
Strand 6	A	885	892	anti-parallel
Strand 7	A	898	905	anti-parallel
Strand 8	A	910	918	anti-parallel
Strand 9	A	921	929	anti-parallel
Strand 10	A	932	940	anti-parallel
Strand 11	A	947	951	anti-parallel
Strand 12	A	968	973	anti-parallel
Strand 13	A	979	983	anti-parallel
Strand 14	A	989	992	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1018	1019	first strand
Strand 2	A	1023	1025	anti-parallel
Strand 3	A	1032	1034	anti-parallel
Strand 4	A	1037	1039	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	58	64	anti-parallel
Strand 3	B	81	83	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	88	92	anti-parallel
Strand 4	B	154	161	anti-parallel
Strand 5	B	143	149	anti-parallel
Strand 6	B	134	138	anti-parallel
Strand 7	B	125	131	anti-parallel
Strand 8	B	117	120	anti-parallel

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There are 64 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	88	92	anti-parallel
Strand 4	B	154	161	anti-parallel
Strand 5	B	166	171	anti-parallel
Strand 6	B	178	182	anti-parallel
Strand 7	B	187	192	anti-parallel
Strand 8	B	198	204	anti-parallel
Strand 9	B	214	222	anti-parallel
Strand 10	B	228	232	anti-parallel
Strand 11	B	238	244	anti-parallel
Strand 12	B	247	252	anti-parallel
Strand 13	B	258	263	anti-parallel
Strand 14	B	272	277	anti-parallel
Strand 15	B	284	289	anti-parallel
Strand 16	B	294	298	anti-parallel
Strand 17	B	304	309	anti-parallel
Strand 18	B	315	319	anti-parallel
Strand 19	B	325	330	anti-parallel
Strand 20	B	336	340	anti-parallel
Strand 21	B	346	351	anti-parallel
Strand 22	B	357	361	anti-parallel
Strand 23	B	367	372	anti-parallel
Strand 24	B	378	382	anti-parallel
Strand 25	B	388	393	anti-parallel
Strand 26	B	399	403	anti-parallel
Strand 27	B	409	414	anti-parallel
Strand 28	B	420	424	anti-parallel
Strand 29	B	430	435	anti-parallel
Strand 30	B	441	445	anti-parallel
Strand 31	B	451	456	anti-parallel
Strand 32	B	462	466	anti-parallel
Strand 33	B	472	477	anti-parallel
Strand 34	B	483	487	anti-parallel
Strand 35	B	493	498	anti-parallel
Strand 36	B	504	508	anti-parallel
Strand 37	B	514	519	anti-parallel
Strand 38	B	525	529	anti-parallel
Strand 39	B	535	540	anti-parallel
Strand 40	B	546	550	anti-parallel
Strand 41	B	556	561	anti-parallel
Strand 42	B	567	571	anti-parallel
Strand 43	B	577	582	anti-parallel
Strand 44	B	589	594	anti-parallel
Strand 45	B	598	603	anti-parallel
Strand 46	B	609	614	anti-parallel
Strand 47	B	617	623	anti-parallel
Strand 48	B	629	633	anti-parallel
Strand 49	B	637	643	anti-parallel
Strand 50	B	649	658	anti-parallel
Strand 51	B	661	671	anti-parallel
Strand 52	B	677	681	anti-parallel
Strand 53	B	687	693	anti-parallel
Strand 54	B	697	703	anti-parallel
Strand 55	B	707	713	anti-parallel
Strand 56	B	719	724	anti-parallel
Strand 57	B	728	734	anti-parallel
Strand 58	B	740	747	anti-parallel
Strand 59	B	755	762	anti-parallel
Strand 60	B	768	773	anti-parallel
Strand 61	B	777	783	anti-parallel
Strand 62	B	789	794	anti-parallel
Strand 63	B	797	803	anti-parallel
Strand 64	B	809	813	anti-parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	839	first strand
Strand 2	B	842	846	anti-parallel
Strand 3	B	852	857	anti-parallel
Strand 4	B	860	866	anti-parallel
Strand 5	B	872	879	anti-parallel
Strand 6	B	884	892	anti-parallel
Strand 7	B	898	905	anti-parallel
Strand 8	B	910	918	anti-parallel
Strand 9	B	921	929	anti-parallel
Strand 10	B	932	940	anti-parallel
Strand 11	B	947	951	anti-parallel
Strand 12	B	968	973	anti-parallel
Strand 13	B	979	983	anti-parallel
Strand 14	B	989	992	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1018	1019	first strand
Strand 2	B	1023	1025	anti-parallel
Strand 3	B	1032	1033	anti-parallel
Strand 4	B	1038	1039	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	52	first strand
Strand 2	C	58	64	anti-parallel
Strand 3	C	81	83	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	88	92	anti-parallel
Strand 4	C	154	160	anti-parallel
Strand 5	C	144	149	anti-parallel
Strand 6	C	134	138	anti-parallel
Strand 7	C	125	131	anti-parallel
Strand 8	C	117	120	anti-parallel

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There are 64 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	88	92	anti-parallel
Strand 4	C	154	160	anti-parallel
Strand 5	C	166	171	anti-parallel
Strand 6	C	178	182	anti-parallel
Strand 7	C	187	192	anti-parallel
Strand 8	C	198	204	anti-parallel
Strand 9	C	214	222	anti-parallel
Strand 10	C	228	232	anti-parallel
Strand 11	C	238	244	anti-parallel
Strand 12	C	247	252	anti-parallel
Strand 13	C	258	263	anti-parallel
Strand 14	C	272	277	anti-parallel
Strand 15	C	284	289	anti-parallel
Strand 16	C	294	298	anti-parallel
Strand 17	C	304	309	anti-parallel
Strand 18	C	315	319	anti-parallel
Strand 19	C	325	330	anti-parallel
Strand 20	C	336	340	anti-parallel
Strand 21	C	346	351	anti-parallel
Strand 22	C	357	361	anti-parallel
Strand 23	C	367	372	anti-parallel
Strand 24	C	378	382	anti-parallel
Strand 25	C	388	393	anti-parallel
Strand 26	C	399	403	anti-parallel
Strand 27	C	409	414	anti-parallel
Strand 28	C	420	424	anti-parallel
Strand 29	C	430	435	anti-parallel
Strand 30	C	441	445	anti-parallel
Strand 31	C	451	456	anti-parallel
Strand 32	C	462	466	anti-parallel
Strand 33	C	472	477	anti-parallel
Strand 34	C	483	487	anti-parallel
Strand 35	C	493	498	anti-parallel
Strand 36	C	504	508	anti-parallel
Strand 37	C	514	519	anti-parallel
Strand 38	C	525	529	anti-parallel
Strand 39	C	535	540	anti-parallel
Strand 40	C	546	550	anti-parallel
Strand 41	C	556	561	anti-parallel
Strand 42	C	567	571	anti-parallel
Strand 43	C	577	582	anti-parallel
Strand 44	C	589	594	anti-parallel
Strand 45	C	597	603	anti-parallel
Strand 46	C	609	614	anti-parallel
Strand 47	C	617	623	anti-parallel
Strand 48	C	629	633	anti-parallel
Strand 49	C	637	643	anti-parallel
Strand 50	C	649	658	anti-parallel
Strand 51	C	661	671	anti-parallel
Strand 52	C	677	681	anti-parallel
Strand 53	C	687	693	anti-parallel
Strand 54	C	697	703	anti-parallel
Strand 55	C	706	713	anti-parallel
Strand 56	C	719	724	anti-parallel
Strand 57	C	729	734	anti-parallel
Strand 58	C	740	746	anti-parallel
Strand 59	C	754	762	anti-parallel
Strand 60	C	768	773	anti-parallel
Strand 61	C	778	783	anti-parallel
Strand 62	C	789	794	anti-parallel
Strand 63	C	799	803	anti-parallel
Strand 64	C	809	814	anti-parallel

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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	838	839	first strand
Strand 2	C	842	846	anti-parallel
Strand 3	C	852	857	anti-parallel
Strand 4	C	860	866	anti-parallel
Strand 5	C	872	879	anti-parallel
Strand 6	C	885	892	anti-parallel
Strand 7	C	898	905	anti-parallel
Strand 8	C	910	918	anti-parallel
Strand 9	C	921	929	anti-parallel
Strand 10	C	932	940	anti-parallel
Strand 11	C	947	951	anti-parallel
Strand 12	C	968	973	anti-parallel
Strand 13	C	979	983	anti-parallel
Strand 14	C	989	992	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	994	995	first strand
Strand 2	C	1001	1003	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1018	1019	first strand
Strand 2	C	1023	1025	anti-parallel
Strand 3	C	1032	1033	anti-parallel
Strand 4	C	1038	1039	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	52	first strand
Strand 2	D	58	64	anti-parallel
Strand 3	D	81	83	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	109	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	88	92	anti-parallel
Strand 4	D	154	160	anti-parallel
Strand 5	D	144	149	anti-parallel
Strand 6	D	134	138	anti-parallel
Strand 7	D	126	131	anti-parallel
Strand 8	D	117	119	anti-parallel

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There are 64 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	109	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	88	92	anti-parallel
Strand 4	D	154	160	anti-parallel
Strand 5	D	166	171	anti-parallel
Strand 6	D	178	182	anti-parallel
Strand 7	D	187	192	anti-parallel
Strand 8	D	198	206	anti-parallel
Strand 9	D	212	222	anti-parallel
Strand 10	D	228	232	anti-parallel
Strand 11	D	238	244	anti-parallel
Strand 12	D	247	252	anti-parallel
Strand 13	D	258	263	anti-parallel
Strand 14	D	272	277	anti-parallel
Strand 15	D	284	288	anti-parallel
Strand 16	D	294	299	anti-parallel
Strand 17	D	304	309	anti-parallel
Strand 18	D	315	319	anti-parallel
Strand 19	D	325	330	anti-parallel
Strand 20	D	336	340	anti-parallel
Strand 21	D	346	351	anti-parallel
Strand 22	D	357	361	anti-parallel
Strand 23	D	367	372	anti-parallel
Strand 24	D	378	382	anti-parallel
Strand 25	D	388	393	anti-parallel
Strand 26	D	399	403	anti-parallel
Strand 27	D	409	414	anti-parallel
Strand 28	D	420	424	anti-parallel
Strand 29	D	430	435	anti-parallel
Strand 30	D	441	445	anti-parallel
Strand 31	D	451	456	anti-parallel
Strand 32	D	462	466	anti-parallel
Strand 33	D	472	477	anti-parallel
Strand 34	D	483	487	anti-parallel
Strand 35	D	493	498	anti-parallel
Strand 36	D	504	508	anti-parallel
Strand 37	D	514	519	anti-parallel
Strand 38	D	525	529	anti-parallel
Strand 39	D	535	540	anti-parallel
Strand 40	D	546	550	anti-parallel
Strand 41	D	556	561	anti-parallel
Strand 42	D	567	571	anti-parallel
Strand 43	D	577	582	anti-parallel
Strand 44	D	589	593	anti-parallel
Strand 45	D	598	603	anti-parallel
Strand 46	D	609	614	anti-parallel
Strand 47	D	617	623	anti-parallel
Strand 48	D	629	633	anti-parallel
Strand 49	D	637	643	anti-parallel
Strand 50	D	649	658	anti-parallel
Strand 51	D	661	671	anti-parallel
Strand 52	D	677	681	anti-parallel
Strand 53	D	687	691	anti-parallel
Strand 54	D	700	703	anti-parallel
Strand 55	D	706	713	anti-parallel
Strand 56	D	719	724	anti-parallel
Strand 57	D	729	734	anti-parallel
Strand 58	D	740	746	anti-parallel
Strand 59	D	755	762	anti-parallel
Strand 60	D	768	773	anti-parallel
Strand 61	D	778	783	anti-parallel
Strand 62	D	789	793	anti-parallel
Strand 63	D	798	803	anti-parallel
Strand 64	D	809	814	anti-parallel

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There are 14 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	838	839	first strand
Strand 2	D	842	846	anti-parallel
Strand 3	D	852	857	anti-parallel
Strand 4	D	860	866	anti-parallel
Strand 5	D	872	879	anti-parallel
Strand 6	D	885	892	anti-parallel
Strand 7	D	898	905	anti-parallel
Strand 8	D	910	918	anti-parallel
Strand 9	D	921	929	anti-parallel
Strand 10	D	932	940	anti-parallel
Strand 11	D	947	951	anti-parallel
Strand 12	D	968	973	anti-parallel
Strand 13	D	979	983	anti-parallel
Strand 14	D	989	992	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1018	1019	first strand
Strand 2	D	1023	1025	anti-parallel
Strand 3	D	1032	1033	anti-parallel
Strand 4	D	1038	1039	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJA