Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QJB entry

There are 2 chains in PDB entry 8QJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 360	LEU 1420
B	GLU 360	GLN 554

There are 6 helices in PDB entry 8QJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	842	844	Right-handed 310
Helix 2	AA2	A	1291	1294	Right-handed 310
Helix 3	AA3	A	1396	1401	Right-handed 310
Helix 4	AA4	B	842	844	Right-handed 310
Helix 5	AA5	B	1291	1294	Right-handed 310
Helix 6	AA6	B	1396	1401	Right-handed 310

There are 10 sheets in PDB entry 8QJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	378	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	397	398	first strand
Strand 2	A	401	402	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	418	422	anti-parallel
Strand 3	A	411	415	anti-parallel
Strand 4	A	480	487	anti-parallel
Strand 5	A	469	475	anti-parallel
Strand 6	A	460	464	anti-parallel
Strand 7	A	447	455	anti-parallel
Strand 8	A	438	444	anti-parallel

Back to list of sheets
Back to top of page

There are 79 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	432	first strand
Strand 2	A	418	422	anti-parallel
Strand 3	A	411	415	anti-parallel
Strand 4	A	480	487	anti-parallel
Strand 5	A	493	499	anti-parallel
Strand 6	A	502	508	anti-parallel
Strand 7	A	513	519	anti-parallel
Strand 8	A	522	530	anti-parallel
Strand 9	A	534	541	anti-parallel
Strand 10	A	547	552	anti-parallel
Strand 11	A	557	562	anti-parallel
Strand 12	A	568	572	anti-parallel
Strand 13	A	578	583	anti-parallel
Strand 14	A	589	594	anti-parallel
Strand 15	A	601	604	anti-parallel
Strand 16	A	611	615	anti-parallel
Strand 17	A	621	626	anti-parallel
Strand 18	A	632	636	anti-parallel
Strand 19	A	642	647	anti-parallel
Strand 20	A	652	656	anti-parallel
Strand 21	A	662	667	anti-parallel
Strand 22	A	673	677	anti-parallel
Strand 23	A	683	688	anti-parallel
Strand 24	A	694	699	anti-parallel
Strand 25	A	703	709	anti-parallel
Strand 26	A	715	719	anti-parallel
Strand 27	A	725	730	anti-parallel
Strand 28	A	736	740	anti-parallel
Strand 29	A	746	751	anti-parallel
Strand 30	A	757	761	anti-parallel
Strand 31	A	767	772	anti-parallel
Strand 32	A	778	782	anti-parallel
Strand 33	A	788	795	anti-parallel
Strand 34	A	803	808	anti-parallel
Strand 35	A	814	819	anti-parallel
Strand 36	A	825	829	anti-parallel
Strand 37	A	835	840	anti-parallel
Strand 38	A	846	850	anti-parallel
Strand 39	A	856	861	anti-parallel
Strand 40	A	867	871	anti-parallel
Strand 41	A	877	882	anti-parallel
Strand 42	A	888	892	anti-parallel
Strand 43	A	898	903	anti-parallel
Strand 44	A	909	913	anti-parallel
Strand 45	A	918	924	anti-parallel
Strand 46	A	930	937	anti-parallel
Strand 47	A	940	951	anti-parallel
Strand 48	A	957	961	anti-parallel
Strand 49	A	966	971	anti-parallel
Strand 50	A	977	982	anti-parallel
Strand 51	A	985	991	anti-parallel
Strand 52	A	998	1003	anti-parallel
Strand 53	A	1006	1012	anti-parallel
Strand 54	A	1018	1023	anti-parallel
Strand 55	A	1029	1033	anti-parallel
Strand 56	A	1039	1044	anti-parallel
Strand 57	A	1049	1054	anti-parallel
Strand 58	A	1060	1065	anti-parallel
Strand 59	A	1081	1087	anti-parallel
Strand 60	A	1093	1098	anti-parallel
Strand 61	A	1102	1108	anti-parallel
Strand 62	A	1114	1120	anti-parallel
Strand 63	A	1128	1134	anti-parallel
Strand 64	A	1140	1147	anti-parallel
Strand 65	A	1150	1160	anti-parallel
Strand 66	A	1163	1175	anti-parallel
Strand 67	A	1191	1204	anti-parallel
Strand 68	A	1210	1217	anti-parallel
Strand 69	A	1223	1229	anti-parallel
Strand 70	A	1235	1239	anti-parallel
Strand 71	A	1245	1250	anti-parallel
Strand 72	A	1256	1261	anti-parallel
Strand 73	A	1268	1274	anti-parallel
Strand 74	A	1277	1284	anti-parallel
Strand 75	A	1296	1300	anti-parallel
Strand 76	A	1307	1312	anti-parallel
Strand 77	A	1315	1321	anti-parallel
Strand 78	A	1327	1332	anti-parallel
Strand 79	A	1337	1340	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1368	1369	first strand
Strand 2	A	1376	1377	anti-parallel
Strand 3	A	1382	1384	anti-parallel
Strand 4	A	1389	1390	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	378	first strand
Strand 2	B	384	391	anti-parallel
Strand 3	B	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	398	first strand
Strand 2	B	401	402	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	432	first strand
Strand 2	B	418	422	anti-parallel
Strand 3	B	411	415	anti-parallel
Strand 4	B	480	487	anti-parallel
Strand 5	B	469	477	anti-parallel
Strand 6	B	459	464	anti-parallel
Strand 7	B	450	455	anti-parallel
Strand 8	B	438	443	anti-parallel

Back to list of sheets
Back to top of page

There are 79 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	432	first strand
Strand 2	B	418	422	anti-parallel
Strand 3	B	411	415	anti-parallel
Strand 4	B	480	487	anti-parallel
Strand 5	B	493	499	anti-parallel
Strand 6	B	502	508	anti-parallel
Strand 7	B	513	519	anti-parallel
Strand 8	B	522	530	anti-parallel
Strand 9	B	534	541	anti-parallel
Strand 10	B	547	552	anti-parallel
Strand 11	B	557	562	anti-parallel
Strand 12	B	568	572	anti-parallel
Strand 13	B	578	583	anti-parallel
Strand 14	B	589	594	anti-parallel
Strand 15	B	601	604	anti-parallel
Strand 16	B	611	615	anti-parallel
Strand 17	B	621	626	anti-parallel
Strand 18	B	632	636	anti-parallel
Strand 19	B	642	647	anti-parallel
Strand 20	B	652	656	anti-parallel
Strand 21	B	662	667	anti-parallel
Strand 22	B	673	677	anti-parallel
Strand 23	B	683	688	anti-parallel
Strand 24	B	694	699	anti-parallel
Strand 25	B	703	709	anti-parallel
Strand 26	B	715	719	anti-parallel
Strand 27	B	725	730	anti-parallel
Strand 28	B	736	740	anti-parallel
Strand 29	B	746	751	anti-parallel
Strand 30	B	757	761	anti-parallel
Strand 31	B	767	772	anti-parallel
Strand 32	B	778	782	anti-parallel
Strand 33	B	788	795	anti-parallel
Strand 34	B	803	808	anti-parallel
Strand 35	B	814	819	anti-parallel
Strand 36	B	825	829	anti-parallel
Strand 37	B	835	840	anti-parallel
Strand 38	B	846	850	anti-parallel
Strand 39	B	856	861	anti-parallel
Strand 40	B	867	871	anti-parallel
Strand 41	B	877	882	anti-parallel
Strand 42	B	888	892	anti-parallel
Strand 43	B	898	903	anti-parallel
Strand 44	B	909	913	anti-parallel
Strand 45	B	918	924	anti-parallel
Strand 46	B	930	937	anti-parallel
Strand 47	B	940	951	anti-parallel
Strand 48	B	957	961	anti-parallel
Strand 49	B	966	971	anti-parallel
Strand 50	B	977	982	anti-parallel
Strand 51	B	985	991	anti-parallel
Strand 52	B	998	1003	anti-parallel
Strand 53	B	1006	1012	anti-parallel
Strand 54	B	1018	1023	anti-parallel
Strand 55	B	1029	1033	anti-parallel
Strand 56	B	1039	1044	anti-parallel
Strand 57	B	1049	1054	anti-parallel
Strand 58	B	1060	1065	anti-parallel
Strand 59	B	1081	1087	anti-parallel
Strand 60	B	1093	1098	anti-parallel
Strand 61	B	1103	1108	anti-parallel
Strand 62	B	1114	1120	anti-parallel
Strand 63	B	1128	1134	anti-parallel
Strand 64	B	1140	1147	anti-parallel
Strand 65	B	1150	1160	anti-parallel
Strand 66	B	1163	1175	anti-parallel
Strand 67	B	1191	1204	anti-parallel
Strand 68	B	1210	1216	anti-parallel
Strand 69	B	1223	1229	anti-parallel
Strand 70	B	1235	1239	anti-parallel
Strand 71	B	1245	1250	anti-parallel
Strand 72	B	1256	1261	anti-parallel
Strand 73	B	1268	1274	anti-parallel
Strand 74	B	1277	1284	anti-parallel
Strand 75	B	1296	1300	anti-parallel
Strand 76	B	1307	1312	anti-parallel
Strand 77	B	1315	1321	anti-parallel
Strand 78	B	1327	1332	anti-parallel
Strand 79	B	1337	1340	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1368	1369	first strand
Strand 2	B	1376	1377	anti-parallel
Strand 3	B	1382	1384	anti-parallel
Strand 4	B	1389	1390	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJB