Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QJE entry

There are 2 chains in PDB entry 8QJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 49MET 503
W
 SER 16LEU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8QJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 92Right-handed alpha
Helix 2
AA2
A
94 112Right-handed alpha
Helix 3
AA3
A
136 153Right-handed alpha
Helix 4
AA4
A
163 178Right-handed alpha
Helix 5
AA5
A
202 204Right-handed 310
Helix 6
AA6
A
259 264Right-handed alpha
Helix 7
AA7
A
264 284Right-handed alpha
Helix 8
AA8
A
301 317Right-handed alpha
Helix 9
AA9
A
347 363Right-handed alpha
Helix 10
AB1
A
365 370Right-handed 310
Helix 11
AB2
A
396 403Right-handed alpha
Helix 12
AB3
A
403 419Right-handed alpha
Helix 13
AB4
A
420 422Right-handed 310
Helix 14
AB5
A
434 452Right-handed alpha
Helix 15
AB6
A
454 462Right-handed alpha
Helix 16
AB7
A
475 502Right-handed alpha
Helix 17
AB8
W
35 40Right-handed alpha
Helix 18
AB9
W
41 46Right-handed 310
Helix 19
AC1
W
48 56Right-handed alpha
Helix 20
AC2
W
71 90Right-handed alpha
Helix 21
AC3
W
107 112Right-handed alpha
Helix 22
AC4
W
220 240Right-handed alpha
Helix 23
AC5
W
241 243Right-handed 310
Helix 24
AC6
W
273 296Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8QJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
206 209anti-parallel
Strand 3
A
221 227anti-parallel
Strand 4
A
230 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
426 431anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 201first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
243 244anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 294first strand
Strand 2
A
333 337anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
97 106first strand
Strand 2
W
192 203anti-parallel
Strand 3
W
123 132anti-parallel
Strand 4
W
137 140anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
116 117first strand
Strand 2
W
154 157anti-parallel
Strand 3
W
146 149anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
250 255first strand
Strand 2
W
258 263anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il