Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QJR entry

There are 8 chains in PDB entry 8QJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	MET 103
B	MET 16	CYS 112
C	PRO 61	ASP 213
D	MET 1	MET 103
E	MET 16	CYS 112
F	ARG 60	ASP 213
G	ASN 1457	LYS 1566
H	ASN 1457	SER 1559

There are 34 helices in PDB entry 8QJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	36	Right-handed alpha
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	B	33	37	Right-handed alpha
Helix 4	AA4	B	39	46	Right-handed alpha
Helix 5	AA5	B	66	84	Right-handed alpha
Helix 6	AA6	B	99	111	Right-handed alpha
Helix 7	AA7	C	141	145	Right-handed 310
Helix 8	AA8	C	157	170	Right-handed alpha
Helix 9	AA9	C	171	178	Right-handed 310
Helix 10	AB1	C	181	190	Right-handed alpha
Helix 11	AB2	C	193	211	Right-handed alpha
Helix 12	AB3	D	23	36	Right-handed alpha
Helix 13	AB4	D	38	42	Right-handed 310
Helix 14	AB5	E	33	37	Right-handed alpha
Helix 15	AB6	E	39	46	Right-handed alpha
Helix 16	AB7	E	66	84	Right-handed alpha
Helix 17	AB8	E	96	111	Right-handed alpha
Helix 18	AB9	F	141	145	Right-handed 310
Helix 19	AC1	F	157	170	Right-handed alpha
Helix 20	AC2	F	171	178	Right-handed 310
Helix 21	AC3	F	181	190	Right-handed alpha
Helix 22	AC4	F	193	211	Right-handed alpha
Helix 23	AC5	G	1458	1472	Right-handed alpha
Helix 24	AC6	G	1482	1486	Right-handed 310
Helix 25	AC7	G	1494	1501	Right-handed alpha
Helix 26	AC8	G	1506	1516	Right-handed alpha
Helix 27	AC9	G	1521	1540	Right-handed alpha
Helix 28	AD1	G	1544	1566	Right-handed alpha
Helix 29	AD2	H	1458	1472	Right-handed alpha
Helix 30	AD3	H	1482	1486	Right-handed 310
Helix 31	AD4	H	1494	1501	Right-handed alpha
Helix 32	AD5	H	1506	1516	Right-handed alpha
Helix 33	AD6	H	1521	1540	Right-handed alpha
Helix 34	AD7	H	1544	1559	Right-handed alpha

There are 8 sheets in PDB entry 8QJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	2	9	parallel
Strand 4	A	12	19	anti-parallel
Strand 5	B	28	32	parallel
Strand 6	B	18	22	anti-parallel
Strand 7	B	59	61	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	84	85	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	112	first strand
Strand 2	C	71	78	anti-parallel
Strand 3	C	147	152	parallel
Strand 4	C	129	130	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	84	89	anti-parallel
Strand 3	C	116	121	anti-parallel
Strand 4	C	135	136	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	73	78	anti-parallel
Strand 3	D	2	9	parallel
Strand 4	D	12	19	anti-parallel
Strand 5	E	28	32	parallel
Strand 6	E	18	22	anti-parallel
Strand 7	E	59	61	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	84	85	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	112	first strand
Strand 2	F	71	78	anti-parallel
Strand 3	F	147	152	parallel
Strand 4	F	129	130	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	95	97	first strand
Strand 2	F	84	89	anti-parallel
Strand 3	F	116	121	anti-parallel
Strand 4	F	135	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJR