Analysis of interatomic Contacts of Structural Units in PDB entry:
8QJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QJU entry

There is 1 chain in PDB entry 8QJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11LEU 1190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8QJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
A
115 136Right-handed alpha
Helix 4
AA4
A
137 154Right-handed alpha
Helix 5
AA5
A
163 173Right-handed alpha
Helix 6
AA6
A
179 191Right-handed alpha
Helix 7
AA7
A
199 222Right-handed alpha
Helix 8
AA8
A
243 252Right-handed alpha
Helix 9
AA9
A
256 260Right-handed 310
Helix 10
AB1
A
261 274Right-handed alpha
Helix 11
AB2
A
286 295Right-handed alpha
Helix 12
AB3
A
296 300Right-handed 310
Helix 13
AB4
A
304 308Right-handed 310
Helix 14
AB5
A
311 315Right-handed 310
Helix 15
AB6
A
317 321Right-handed 310
Helix 16
AB7
A
341 352Right-handed alpha
Helix 17
AB8
A
382 394Right-handed alpha
Helix 18
AB9
A
410 426Right-handed alpha
Helix 19
AC1
A
427 429Right-handed 310
Helix 20
AC2
A
526 530Right-handed 310
Helix 21
AC3
A
539 555Right-handed alpha
Helix 22
AC4
A
609 620Right-handed alpha
Helix 23
AC5
A
639 644Right-handed alpha
Helix 24
AC6
A
652 663Right-handed alpha
Helix 25
AC7
A
712 723Right-handed alpha
Helix 26
AC8
A
736 743Right-handed alpha
Helix 27
AC9
A
835 843Right-handed alpha
Helix 28
AD1
A
845 849Right-handed 310
Helix 29
AD2
A
892 908Right-handed alpha
Helix 30
AD3
A
927 934Right-handed alpha
Helix 31
AD4
A
959 970Right-handed alpha
Helix 32
AD5
A
970 979Right-handed alpha
Helix 33
AD6
A
999 1005Right-handed alpha
Helix 34
AD7
A
1018 1030Right-handed alpha
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There are 15 sheets in PDB entry 8QJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
51 55anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
26 31anti-parallel
Strand 5
A
107 113anti-parallel
Strand 6
A
95 100anti-parallel
Strand 7
A
70 72anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
196 198anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
284 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
339 340anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
380 381anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
851 854first strand
Strand 2
A
502 505anti-parallel
Strand 3
A
492 499anti-parallel
Strand 4
A
479 483anti-parallel
Strand 5
A
888 889anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 565first strand
Strand 2
A
573 579anti-parallel
Strand 3
A
582 593anti-parallel
Strand 4
A
596 600anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 624first strand
Strand 2
A
627 629anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
668 673parallel
Strand 3
A
680 685anti-parallel
Strand 4
A
690 697anti-parallel
Strand 5
A
702 704anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 648first strand
Strand 2
A
668 673parallel
Strand 3
A
733 734parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
858 862first strand
Strand 2
A
874 878anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
938 939first strand
Strand 2
A
954 956parallel
Strand 3
A
982 985parallel
Strand 4
A
1009 1010parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1061 1063first strand
Strand 2
A
1186 1188anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1098 1100first strand
Strand 2
A
1082 1088anti-parallel
Strand 3
A
1132 1140anti-parallel
Strand 4
A
1144 1153anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1163 1164first strand
Strand 2
A
1181 1182anti-parallel
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