Analysis of interatomic Contacts of Structural Units in PDB entry:
8QK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QK1 entry

There is 1 chain in PDB entry 8QK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 54LYS 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8QK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 73Right-handed 310
Helix 2
AA2
A
74 85Right-handed alpha
Helix 3
AA3
A
101 108Right-handed 310
Helix 4
AA4
A
114 128Right-handed alpha
Helix 5
AA5
A
142 147Right-handed alpha
Helix 6
AA6
A
151 153Right-handed 310
Helix 7
AA7
A
168 187Right-handed alpha
Helix 8
AA8
A
188 190Right-handed 310
Helix 9
AA9
A
221 240Right-handed alpha
Helix 10
AB1
A
248 250Right-handed 310
Helix 11
AB2
A
254 261Right-handed alpha
Helix 12
AB3
A
262 265Right-handed 310
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
285 292Right-handed alpha
Helix 15
AB6
A
315 334Right-handed alpha
Helix 16
AB7
A
335 337Right-handed 310
Helix 17
AB8
A
360 377Right-handed alpha
Helix 18
AB9
A
381 393Right-handed alpha
Helix 19
AC1
A
411 434Right-handed alpha
Helix 20
AC2
A
434 441Right-handed alpha
Helix 21
AC3
A
442 448Right-handed alpha
Helix 22
AC4
A
452 483Right-handed alpha
Helix 23
AC5
A
486 498Right-handed alpha
Helix 24
AC6
A
498 517Right-handed alpha
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There are 2 sheets in PDB entry 8QK1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
89 93parallel
Strand 3
A
58 64parallel
Strand 4
A
339 347parallel
Strand 5
A
296 304parallel
Strand 6
A
267 272parallel
Strand 7
A
242 246parallel
Strand 8
A
192 194parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
160 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il