Analysis of interatomic Contacts of Structural Units in PDB entry:
8QKK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QKK entry

There is 1 chain in PDB entry 8QKK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ALA 738
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8QKK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
12 32Right-handed alpha
Helix 3
AA3
A
33 36Right-handed 310
Helix 4
AA4
A
48 62Right-handed alpha
Helix 5
AA5
A
64 67Right-handed 310
Helix 6
AA6
A
75 79Right-handed 310
Helix 7
AA7
A
83 101Right-handed alpha
Helix 8
AA8
A
112 114Right-handed 310
Helix 9
AA9
A
119 124Right-handed alpha
Helix 10
AB1
A
143 159Right-handed alpha
Helix 11
AB2
A
160 164Right-handed 310
Helix 12
AB3
A
171 205Right-handed alpha
Helix 13
AB4
A
208 211Right-handed 310
Helix 14
AB5
A
212 234Right-handed alpha
Helix 15
AB6
A
241 272Right-handed alpha
Helix 16
AB7
A
274 285Right-handed alpha
Helix 17
AB8
A
285 302Right-handed alpha
Helix 18
AB9
A
303 307Right-handed 310
Helix 19
AC1
A
309 332Right-handed alpha
Helix 20
AC2
A
332 342Right-handed alpha
Helix 21
AC3
A
343 346Right-handed 310
Helix 22
AC4
A
350 356Right-handed alpha
Helix 23
AC5
A
363 374Right-handed alpha
Helix 24
AC6
A
385 400Right-handed alpha
Helix 25
AC7
A
400 416Right-handed alpha
Helix 26
AC8
A
417 422Right-handed 310
Helix 27
AC9
A
428 432Right-handed 310
Helix 28
AD1
A
436 449Right-handed alpha
Helix 29
AD2
A
470 484Right-handed alpha
Helix 30
AD3
A
493 497Right-handed 310
Helix 31
AD4
A
525 536Right-handed alpha
Helix 32
AD5
A
548 584Right-handed alpha
Helix 33
AD6
A
587 612Right-handed alpha
Helix 34
AD7
A
629 660Right-handed alpha
Helix 35
AD8
A
663 695Right-handed alpha
Helix 36
AD9
A
698 722Right-handed alpha
Helix 37
AE1
A
722 732Right-handed alpha
Helix 38
AE2
A
733 737Right-handed 310
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There are 3 sheets in PDB entry 8QKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 110first strand
Strand 2
A
133 136anti-parallel
Strand 3
A
69 73anti-parallel
Strand 4
A
166 170anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 425first strand
Strand 2
A
627 628parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 500first strand
Strand 2
A
513 518anti-parallel
Strand 3
A
457 463anti-parallel
Strand 4
A
542 547anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il