Analysis of interatomic Contacts of Structural Units in PDB entry:
8QKS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QKS entry

There are 24 chains in PDB entry 8QKS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 7	TYR 311
B	ALA 7	GLY 102
C	GLU 1	SER 120
D	GLN 7	ILE 305
E	ALA 7	VAL 103
F	GLU 1	SER 120
G	ASN 4	TYR 311
H	GLN 7	ILE 305
I	ALA 7	VAL 103
J	GLU 1	SER 120
K	ALA 7	VAL 103
L	GLU 1	SER 120
M	GLN 7	TYR 311
N	GLN 7	ILE 305
O	ALA 7	VAL 103
P	GLU 1	SER 120
Q	ALA 7	VAL 103
R	GLU 1	SER 120
S	ASN 20	TYR 311
T	GLN 7	ILE 305
U	ALA 7	VAL 103
V	GLU 1	SER 120
W	ALA 7	VAL 103
X	GLU 1	SER 120

There are111 helices in PDB entry 8QKS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	46	Right-handed alpha
Helix 2	AA2	A	49	55	Right-handed alpha
Helix 3	AA3	A	58	62	Right-handed 310
Helix 4	AA4	A	63	78	Right-handed alpha
Helix 5	AA5	A	86	100	Right-handed alpha
Helix 6	AA6	A	102	106	Right-handed 310
Helix 7	AA7	A	113	118	Right-handed alpha
Helix 8	AA8	A	123	133	Right-handed alpha
Helix 9	AA9	A	139	154	Right-handed alpha
Helix 10	AB1	A	167	185	Right-handed alpha
Helix 11	AB2	A	187	212	Right-handed alpha
Helix 12	AB3	A	218	244	Right-handed alpha
Helix 13	AB4	A	253	258	Right-handed alpha
Helix 14	AB5	A	263	296	Right-handed alpha
Helix 15	AB6	A	301	307	Right-handed alpha
Helix 16	AB7	C	28	32	Right-handed 310
Helix 17	AB8	D	37	46	Right-handed alpha
Helix 18	AB9	D	49	55	Right-handed alpha
Helix 19	AC1	D	58	62	Right-handed 310
Helix 20	AC2	D	63	78	Right-handed alpha
Helix 21	AC3	D	86	99	Right-handed alpha
Helix 22	AC4	D	115	133	Right-handed alpha
Helix 23	AC5	D	133	154	Right-handed alpha
Helix 24	AC6	D	167	184	Right-handed alpha
Helix 25	AC7	D	185	187	Right-handed 310
Helix 26	AC8	D	188	204	Right-handed alpha
Helix 27	AC9	D	219	258	Right-handed alpha
Helix 28	AD1	D	263	296	Right-handed alpha
Helix 29	AD2	F	28	32	Right-handed 310
Helix 30	AD3	G	37	46	Right-handed alpha
Helix 31	AD4	G	49	55	Right-handed alpha
Helix 32	AD5	G	58	62	Right-handed 310
Helix 33	AD6	G	63	78	Right-handed alpha
Helix 34	AD7	G	80	84	Right-handed 310
Helix 35	AD8	G	86	101	Right-handed alpha
Helix 36	AD9	G	115	133	Right-handed alpha
Helix 37	AE1	G	133	154	Right-handed alpha
Helix 38	AE2	G	168	185	Right-handed alpha
Helix 39	AE3	G	187	212	Right-handed alpha
Helix 40	AE4	G	218	258	Right-handed alpha
Helix 41	AE5	G	263	296	Right-handed alpha
Helix 42	AE6	G	301	307	Right-handed alpha
Helix 43	AE7	H	37	46	Right-handed alpha
Helix 44	AE8	H	49	55	Right-handed alpha
Helix 45	AE9	H	58	62	Right-handed 310
Helix 46	AF1	H	63	78	Right-handed alpha
Helix 47	AF2	H	86	93	Right-handed alpha
Helix 48	AF3	H	115	133	Right-handed alpha
Helix 49	AF4	H	133	154	Right-handed alpha
Helix 50	AF5	H	167	185	Right-handed alpha
Helix 51	AF6	H	187	203	Right-handed alpha
Helix 52	AF7	H	219	245	Right-handed alpha
Helix 53	AF8	H	249	251	Right-handed 310
Helix 54	AF9	H	252	258	Right-handed alpha
Helix 55	AG1	H	263	296	Right-handed alpha
Helix 56	AG2	J	28	32	Right-handed 310
Helix 57	AG3	L	28	32	Right-handed 310
Helix 58	AG4	M	37	46	Right-handed alpha
Helix 59	AG5	M	49	55	Right-handed alpha
Helix 60	AG6	M	58	62	Right-handed 310
Helix 61	AG7	M	63	78	Right-handed alpha
Helix 62	AG8	M	80	84	Right-handed 310
Helix 63	AG9	M	86	101	Right-handed alpha
Helix 64	AH1	M	113	133	Right-handed alpha
Helix 65	AH2	M	133	154	Right-handed alpha
Helix 66	AH3	M	167	185	Right-handed alpha
Helix 67	AH4	M	187	213	Right-handed alpha
Helix 68	AH5	M	219	244	Right-handed alpha
Helix 69	AH6	M	252	258	Right-handed alpha
Helix 70	AH7	M	263	296	Right-handed alpha
Helix 71	AH8	M	301	307	Right-handed alpha
Helix 72	AH9	N	37	46	Right-handed alpha
Helix 73	AI1	N	49	55	Right-handed alpha
Helix 74	AI2	N	58	62	Right-handed 310
Helix 75	AI3	N	63	78	Right-handed alpha
Helix 76	AI4	N	80	84	Right-handed 310
Helix 77	AI5	N	86	99	Right-handed alpha
Helix 78	AI6	N	115	133	Right-handed alpha
Helix 79	AI7	N	133	154	Right-handed alpha
Helix 80	AI8	N	167	185	Right-handed alpha
Helix 81	AI9	N	187	201	Right-handed alpha
Helix 82	AJ1	N	219	258	Right-handed alpha
Helix 83	AJ2	N	263	296	Right-handed alpha
Helix 84	AJ3	P	28	32	Right-handed 310
Helix 85	AJ4	R	28	32	Right-handed 310
Helix 86	AJ5	S	37	46	Right-handed alpha
Helix 87	AJ6	S	49	55	Right-handed alpha
Helix 88	AJ7	S	58	62	Right-handed 310
Helix 89	AJ8	S	63	78	Right-handed alpha
Helix 90	AJ9	S	86	101	Right-handed alpha
Helix 91	AK1	S	116	133	Right-handed alpha
Helix 92	AK2	S	133	154	Right-handed alpha
Helix 93	AK3	S	167	185	Right-handed alpha
Helix 94	AK4	S	187	212	Right-handed alpha
Helix 95	AK5	S	219	258	Right-handed alpha
Helix 96	AK6	S	263	296	Right-handed alpha
Helix 97	AK7	S	301	307	Right-handed alpha
Helix 98	AK8	T	37	46	Right-handed alpha
Helix 99	AK9	T	49	55	Right-handed alpha
Helix 100	AL1	T	58	62	Right-handed 310
Helix 101	AL2	T	63	78	Right-handed alpha
Helix 102	AL3	T	86	99	Right-handed alpha
Helix 103	AL4	T	115	133	Right-handed alpha
Helix 104	AL5	T	133	154	Right-handed alpha
Helix 105	AL6	T	167	185	Right-handed alpha
Helix 106	AL7	T	187	202	Right-handed alpha
Helix 107	AL8	T	219	254	Right-handed alpha
Helix 108	AL9	T	263	296	Right-handed alpha
Helix 109	AM1	V	28	32	Right-handed 310
Helix 110	AM2	W	29	34	Right-handed alpha
Helix 111	AM3	X	28	32	Right-handed 310

There are 51 sheets in PDB entry 8QKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	33	35	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	261	262	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	27	first strand
Strand 2	B	75	81	anti-parallel
Strand 3	B	69	72	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	53	first strand
Strand 2	B	39	43	anti-parallel
Strand 3	B	90	94	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	114	118	parallel
Strand 3	C	92	95	anti-parallel
Strand 4	C	35	39	anti-parallel
Strand 5	C	45	50	anti-parallel
Strand 6	C	59	60	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	68	73	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	107	110	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	22	24	first strand
Strand 2	D	34	36	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	261	262	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	27	first strand
Strand 2	E	75	81	anti-parallel
Strand 3	E	69	72	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	39	43	anti-parallel
Strand 3	E	90	94	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	114	118	parallel
Strand 3	F	92	95	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	45	50	anti-parallel
Strand 6	F	59	60	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	21	first strand
Strand 2	F	78	83	anti-parallel
Strand 3	F	68	73	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	99	first strand
Strand 2	F	107	110	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	164	first strand
Strand 2	G	261	262	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	24	first strand
Strand 2	H	34	36	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	21	27	first strand
Strand 2	I	75	81	anti-parallel
Strand 3	I	69	72	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	50	53	first strand
Strand 2	I	39	43	anti-parallel
Strand 3	I	90	94	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	114	118	parallel
Strand 3	J	92	95	anti-parallel
Strand 4	J	35	39	anti-parallel
Strand 5	J	45	50	anti-parallel
Strand 6	J	59	60	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	21	first strand
Strand 2	J	78	83	anti-parallel
Strand 3	J	68	73	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	97	99	first strand
Strand 2	J	107	110	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	27	first strand
Strand 2	K	75	81	anti-parallel
Strand 3	K	69	72	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	50	53	first strand
Strand 2	K	39	43	anti-parallel
Strand 3	K	90	94	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	21	first strand
Strand 2	L	78	83	anti-parallel
Strand 3	L	68	73	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	59	60	first strand
Strand 2	L	45	50	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	92	95	anti-parallel
Strand 5	L	114	116	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	98	99	first strand
Strand 2	L	107	109	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	22	25	first strand
Strand 2	M	33	36	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	163	164	first strand
Strand 2	M	261	262	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	24	first strand
Strand 2	N	34	36	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	21	27	first strand
Strand 2	O	75	81	anti-parallel
Strand 3	O	69	72	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	50	53	first strand
Strand 2	O	39	43	anti-parallel
Strand 3	O	90	94	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	11	12	first strand
Strand 2	P	114	118	parallel
Strand 3	P	92	95	anti-parallel
Strand 4	P	35	39	anti-parallel
Strand 5	P	45	50	anti-parallel
Strand 6	P	59	60	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	18	21	first strand
Strand 2	P	78	83	anti-parallel
Strand 3	P	68	73	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	21	27	first strand
Strand 2	Q	75	81	anti-parallel
Strand 3	Q	69	72	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	50	53	first strand
Strand 2	Q	39	43	anti-parallel
Strand 3	Q	90	94	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	11	12	first strand
Strand 2	R	114	118	parallel
Strand 3	R	92	95	anti-parallel
Strand 4	R	35	40	anti-parallel
Strand 5	R	44	50	anti-parallel
Strand 6	R	59	60	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	18	21	first strand
Strand 2	R	79	83	anti-parallel
Strand 3	R	68	72	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	97	99	first strand
Strand 2	R	107	110	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	22	25	first strand
Strand 2	S	33	36	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	163	164	first strand
Strand 2	S	261	262	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	22	26	first strand
Strand 2	T	32	36	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	21	27	first strand
Strand 2	U	75	81	anti-parallel
Strand 3	U	69	72	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	50	53	first strand
Strand 2	U	39	42	anti-parallel
Strand 3	U	93	94	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	11	12	first strand
Strand 2	V	114	118	parallel
Strand 3	V	92	95	anti-parallel
Strand 4	V	35	39	anti-parallel
Strand 5	V	45	50	anti-parallel
Strand 6	V	59	60	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	18	21	first strand
Strand 2	V	78	83	anti-parallel
Strand 3	V	68	73	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	97	99	first strand
Strand 2	V	107	110	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	23	26	first strand
Strand 2	W	75	79	anti-parallel
Strand 3	W	69	72	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	50	53	first strand
Strand 2	W	39	42	anti-parallel
Strand 3	W	91	94	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	18	21	first strand
Strand 2	X	78	83	anti-parallel
Strand 3	X	69	73	anti-parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	59	60	first strand
Strand 2	X	45	50	anti-parallel
Strand 3	X	35	39	anti-parallel
Strand 4	X	92	95	anti-parallel
Strand 5	X	114	116	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	97	99	first strand
Strand 2	X	107	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QKS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QKS