Analysis of interatomic Contacts of Structural Units in PDB entry:
8QL0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QL0 entry

There is 1 chain in PDB entry 8QL0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8PRO 694
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8QL0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
143 147Right-handed 310
Helix 2
AA2
A
164 168Right-handed 310
Helix 3
AA3
A
185 189Right-handed 310
Helix 4
AA4
A
199 204Right-handed alpha
Helix 5
AA5
A
213 218Right-handed alpha
Helix 6
AA6
A
327 339Right-handed alpha
Helix 7
AA7
A
355 360Right-handed alpha
Helix 8
AA8
A
388 393Right-handed 310
Helix 9
AA9
A
453 463Right-handed alpha
Helix 10
AB1
A
480 483Right-handed 310
Helix 11
AB2
A
507 520Right-handed alpha
Helix 12
AB3
A
532 539Right-handed alpha
Helix 13
AB4
A
546 551Right-handed alpha
Helix 14
AB5
A
552 578Right-handed alpha
Helix 15
AB6
A
580 582Right-handed 310
Helix 16
AB7
A
642 652Right-handed alpha
Helix 17
AB8
A
653 655Right-handed 310
Helix 18
AB9
A
663 668Right-handed alpha
Helix 19
AC1
A
688 692Right-handed 310
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There are 13 sheets in PDB entry 8QL0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
23 28parallel
Strand 3
A
113 127parallel
Strand 4
A
97 104anti-parallel
Strand 5
A
47 52anti-parallel
Strand 6
A
74 76anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
23 28parallel
Strand 3
A
113 127parallel
Strand 4
A
190 197anti-parallel
Strand 5
A
252 261anti-parallel
Strand 6
A
220 225anti-parallel
Strand 7
A
232 237anti-parallel
Strand 8
A
178 180anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
33 36parallel
Strand 3
A
82 87anti-parallel
Strand 4
A
56 59anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
291 302parallel
Strand 3
A
272 281anti-parallel
Strand 4
A
206 211anti-parallel
Strand 5
A
243 247anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
361 368anti-parallel
Strand 3
A
371 378anti-parallel
Strand 4
A
399 402parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 346first strand
Strand 2
A
314 320parallel
Strand 3
A
677 682anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
437 441anti-parallel
Strand 3
A
469 472parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
425 427first strand
Strand 2
A
430 432anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 489first strand
Strand 2
A
500 506anti-parallel
Strand 3
A
584 588parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 527first strand
Strand 2
A
544 545anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 594first strand
Strand 2
A
609 612anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 623first strand
Strand 2
A
626 630anti-parallel
Strand 3
A
657 661parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
636 637first strand
Strand 2
A
640 641anti-parallel
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