Analysis of interatomic Contacts of Structural Units in PDB entry:
8QL1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QL1 entry

There are 8 chains in PDB entry 8QL1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 5303	THR 5591
B	ALA 11	VAL 100
C	ASN 5302	THR 5591
D	ARG 12	GLN 95
E	ASN 5302	THR 5591
F	ARG 12	GLN 95
G	PRO 5303	ALA 5592
H	VAL 10	GLN 54

There are 47 helices in PDB entry 8QL1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5305	5336	Right-handed alpha
Helix 2	AA2	A	5393	5398	Right-handed alpha
Helix 3	AA3	A	5400	5419	Right-handed alpha
Helix 4	AA4	A	5443	5454	Right-handed alpha
Helix 5	AA5	A	5462	5479	Right-handed alpha
Helix 6	AA6	A	5505	5519	Right-handed alpha
Helix 7	AA7	A	5558	5561	Right-handed 310
Helix 8	AA8	A	5571	5573	Right-handed 310
Helix 9	AA9	A	5574	5591	Right-handed alpha
Helix 10	AB1	B	40	53	Right-handed alpha
Helix 11	AB2	B	72	79	Right-handed alpha
Helix 12	AB3	C	5303	5336	Right-handed alpha
Helix 13	AB4	C	5379	5381	Right-handed 310
Helix 14	AB5	C	5393	5398	Right-handed alpha
Helix 15	AB6	C	5400	5418	Right-handed alpha
Helix 16	AB7	C	5443	5454	Right-handed alpha
Helix 17	AB8	C	5462	5478	Right-handed alpha
Helix 18	AB9	C	5505	5519	Right-handed alpha
Helix 19	AC1	C	5558	5561	Right-handed 310
Helix 20	AC2	C	5571	5573	Right-handed 310
Helix 21	AC3	C	5574	5591	Right-handed alpha
Helix 22	AC4	D	40	53	Right-handed alpha
Helix 23	AC5	D	72	79	Right-handed alpha
Helix 24	AC6	E	5303	5336	Right-handed alpha
Helix 25	AC7	E	5379	5381	Right-handed 310
Helix 26	AC8	E	5393	5398	Right-handed alpha
Helix 27	AC9	E	5400	5418	Right-handed alpha
Helix 28	AD1	E	5443	5454	Right-handed alpha
Helix 29	AD2	E	5462	5478	Right-handed alpha
Helix 30	AD3	E	5505	5519	Right-handed alpha
Helix 31	AD4	E	5536	5539	Right-handed 310
Helix 32	AD5	E	5558	5561	Right-handed 310
Helix 33	AD6	E	5571	5573	Right-handed 310
Helix 34	AD7	E	5574	5591	Right-handed alpha
Helix 35	AD8	F	40	53	Right-handed alpha
Helix 36	AD9	F	72	79	Right-handed alpha
Helix 37	AE1	G	5304	5336	Right-handed alpha
Helix 38	AE2	G	5393	5398	Right-handed alpha
Helix 39	AE3	G	5400	5419	Right-handed alpha
Helix 40	AE4	G	5443	5454	Right-handed alpha
Helix 41	AE5	G	5462	5477	Right-handed alpha
Helix 42	AE6	G	5505	5519	Right-handed alpha
Helix 43	AE7	G	5558	5561	Right-handed 310
Helix 44	AE8	G	5571	5573	Right-handed 310
Helix 45	AE9	G	5574	5592	Right-handed alpha
Helix 46	AF1	H	40	53	Right-handed alpha
Helix 47	AF2	H	72	78	Right-handed alpha

There are 12 sheets in PDB entry 8QL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5433	5436	first strand
Strand 2	A	5421	5428	anti-parallel
Strand 3	A	5383	5390	parallel
Strand 4	A	5489	5496	parallel
Strand 5	A	5521	5528	parallel
Strand 6	A	5566	5569	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5541	5544	first strand
Strand 2	A	5553	5556	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	36	first strand
Strand 2	B	16	22	anti-parallel
Strand 3	B	88	94	parallel
Strand 4	B	60	64	anti-parallel
Strand 5	B	67	68	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5433	5436	first strand
Strand 2	C	5423	5428	anti-parallel
Strand 3	C	5383	5390	parallel
Strand 4	C	5489	5496	parallel
Strand 5	C	5521	5528	parallel
Strand 6	C	5566	5569	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5541	5544	first strand
Strand 2	C	5553	5556	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	36	first strand
Strand 2	D	16	22	anti-parallel
Strand 3	D	88	94	parallel
Strand 4	D	60	64	anti-parallel
Strand 5	D	67	68	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5433	5436	first strand
Strand 2	E	5423	5428	anti-parallel
Strand 3	E	5383	5390	parallel
Strand 4	E	5489	5496	parallel
Strand 5	E	5521	5528	parallel
Strand 6	E	5566	5569	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5541	5544	first strand
Strand 2	E	5553	5556	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	36	first strand
Strand 2	F	16	22	anti-parallel
Strand 3	F	88	94	parallel
Strand 4	F	60	64	anti-parallel
Strand 5	F	67	68	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5433	5436	first strand
Strand 2	G	5421	5428	anti-parallel
Strand 3	G	5383	5390	parallel
Strand 4	G	5489	5496	parallel
Strand 5	G	5521	5528	parallel
Strand 6	G	5566	5569	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5541	5544	first strand
Strand 2	G	5553	5556	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	36	first strand
Strand 2	H	16	22	anti-parallel
Strand 3	H	88	94	parallel
Strand 4	H	60	64	anti-parallel
Strand 5	H	67	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QL1

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QL1