Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QLC entry

There is 1 chain in PDB entry 8QLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 29LYS 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 8QLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 59Right-handed alpha
Helix 2
AA2
A
114 127Right-handed alpha
Helix 3
AA3
A
131 135Right-handed 310
Helix 4
AA4
A
141 146Right-handed alpha
Helix 5
AA5
A
152 156Right-handed 310
Helix 6
AA6
A
176 181Right-handed alpha
Helix 7
AA7
A
182 187Right-handed 310
Helix 8
AA8
A
190 198Right-handed alpha
Helix 9
AA9
A
199 201Right-handed 310
Helix 10
AB1
A
205 209Right-handed 310
Helix 11
AB2
A
236 240Right-handed 310
Helix 12
AB3
A
254 256Right-handed 310
Helix 13
AB4
A
257 264Right-handed alpha
Helix 14
AB5
A
278 286Right-handed alpha
Helix 15
AB6
A
318 330Right-handed alpha
Helix 16
AB7
A
331 342Right-handed alpha
Helix 17
AB8
A
343 352Right-handed alpha
Helix 18
AB9
A
355 361Right-handed 310
Helix 19
AC1
A
378 387Right-handed alpha
Helix 20
AC2
A
388 394Right-handed 310
Helix 21
AC3
A
407 425Right-handed alpha
Helix 22
AC4
A
441 460Right-handed alpha
Helix 23
AC5
A
472 480Right-handed alpha
Helix 24
AC6
A
485 489Right-handed 310
Helix 25
AC7
A
505 510Right-handed alpha
Helix 26
AC8
A
511 513Right-handed 310
Helix 27
AC9
A
519 524Right-handed 310
Helix 28
AD1
A
530 537Right-handed alpha
Helix 29
AD2
A
538 551Right-handed alpha
Helix 30
AD3
A
555 574Right-handed alpha
Helix 31
AD4
A
621 649Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8QLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
244 249parallel
Strand 3
A
225 230anti-parallel
Strand 4
A
215 221anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
74 76anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 84first strand
Strand 2
A
90 95anti-parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
158 162anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
108 111anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 271first strand
Strand 2
A
586 589anti-parallel
Strand 3
A
291 292anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 499first strand
Strand 2
A
295 304anti-parallel
Strand 3
A
576 583anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
376 377anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 438first strand
Strand 2
A
464 471parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il