Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QLG entry

There are 4 chains in PDB entry 8QLG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 29	LYS 652
E	PHE 1	VAL 6
B	ASP 29	LYS 652
C	PHE 1	VAL 6

There are 62 helices in PDB entry 8QLG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	59	Right-handed alpha
Helix 2	AA2	A	114	127	Right-handed alpha
Helix 3	AA3	A	131	135	Right-handed 310
Helix 4	AA4	A	141	147	Right-handed alpha
Helix 5	AA5	A	152	156	Right-handed 310
Helix 6	AA6	A	176	181	Right-handed alpha
Helix 7	AA7	A	182	187	Right-handed 310
Helix 8	AA8	A	190	198	Right-handed alpha
Helix 9	AA9	A	199	201	Right-handed 310
Helix 10	AB1	A	205	209	Right-handed 310
Helix 11	AB2	A	236	240	Right-handed 310
Helix 12	AB3	A	257	264	Right-handed alpha
Helix 13	AB4	A	278	286	Right-handed alpha
Helix 14	AB5	A	318	330	Right-handed alpha
Helix 15	AB6	A	331	342	Right-handed alpha
Helix 16	AB7	A	343	352	Right-handed alpha
Helix 17	AB8	A	355	361	Right-handed 310
Helix 18	AB9	A	378	388	Right-handed alpha
Helix 19	AC1	A	389	394	Right-handed 310
Helix 20	AC2	A	407	424	Right-handed alpha
Helix 21	AC3	A	441	460	Right-handed alpha
Helix 22	AC4	A	472	480	Right-handed alpha
Helix 23	AC5	A	485	489	Right-handed 310
Helix 24	AC6	A	505	510	Right-handed alpha
Helix 25	AC7	A	511	513	Right-handed 310
Helix 26	AC8	A	519	524	Right-handed 310
Helix 27	AC9	A	530	537	Right-handed alpha
Helix 28	AD1	A	538	551	Right-handed alpha
Helix 29	AD2	A	555	574	Right-handed alpha
Helix 30	AD3	A	621	648	Right-handed alpha
Helix 31	AD4	A	649	651	Right-handed 310
Helix 32	AD5	B	51	59	Right-handed alpha
Helix 33	AD6	B	114	127	Right-handed alpha
Helix 34	AD7	B	131	135	Right-handed 310
Helix 35	AD8	B	141	147	Right-handed alpha
Helix 36	AD9	B	152	156	Right-handed 310
Helix 37	AE1	B	176	181	Right-handed alpha
Helix 38	AE2	B	182	187	Right-handed 310
Helix 39	AE3	B	190	198	Right-handed alpha
Helix 40	AE4	B	199	201	Right-handed 310
Helix 41	AE5	B	205	209	Right-handed 310
Helix 42	AE6	B	236	240	Right-handed 310
Helix 43	AE7	B	256	264	Right-handed alpha
Helix 44	AE8	B	278	286	Right-handed alpha
Helix 45	AE9	B	318	330	Right-handed alpha
Helix 46	AF1	B	331	342	Right-handed alpha
Helix 47	AF2	B	343	352	Right-handed alpha
Helix 48	AF3	B	357	361	Right-handed 310
Helix 49	AF4	B	378	388	Right-handed alpha
Helix 50	AF5	B	390	394	Right-handed 310
Helix 51	AF6	B	407	424	Right-handed alpha
Helix 52	AF7	B	441	460	Right-handed alpha
Helix 53	AF8	B	472	480	Right-handed alpha
Helix 54	AF9	B	485	489	Right-handed 310
Helix 55	AG1	B	505	510	Right-handed alpha
Helix 56	AG2	B	511	513	Right-handed 310
Helix 57	AG3	B	519	524	Right-handed 310
Helix 58	AG4	B	530	537	Right-handed alpha
Helix 59	AG5	B	538	551	Right-handed alpha
Helix 60	AG6	B	555	574	Right-handed alpha
Helix 61	AG7	B	621	647	Right-handed alpha
Helix 62	AG8	B	648	651	Right-handed 310

There are 16 sheets in PDB entry 8QLG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	37	first strand
Strand 2	A	244	249	parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	215	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	68	first strand
Strand 2	A	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	84	first strand
Strand 2	A	90	95	anti-parallel
Strand 3	A	165	169	anti-parallel
Strand 4	A	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	108	111	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	586	589	anti-parallel
Strand 3	A	291	292	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	499	first strand
Strand 2	A	298	304	anti-parallel
Strand 3	A	576	581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	373	first strand
Strand 2	A	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	438	first strand
Strand 2	A	464	471	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	37	first strand
Strand 2	B	244	249	parallel
Strand 3	B	225	230	anti-parallel
Strand 4	B	215	221	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	90	95	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	108	111	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	271	first strand
Strand 2	B	586	589	anti-parallel
Strand 3	B	291	292	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	499	first strand
Strand 2	B	298	304	anti-parallel
Strand 3	B	576	581	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	373	first strand
Strand 2	B	376	377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	438	first strand
Strand 2	B	464	471	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QLG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLG