Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QLH entry

There is 1 chain in PDB entry 8QLH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31LYS 655
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8QLH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 65Right-handed alpha
Helix 2
AA2
A
117 130Right-handed alpha
Helix 3
AA3
A
144 151Right-handed alpha
Helix 4
AA4
A
155 159Right-handed 310
Helix 5
AA5
A
180 184Right-handed 310
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
193 201Right-handed alpha
Helix 8
AA8
A
202 204Right-handed 310
Helix 9
AA9
A
208 212Right-handed 310
Helix 10
AB1
A
239 243Right-handed 310
Helix 11
AB2
A
259 267Right-handed alpha
Helix 12
AB3
A
281 289Right-handed alpha
Helix 13
AB4
A
321 334Right-handed alpha
Helix 14
AB5
A
334 345Right-handed alpha
Helix 15
AB6
A
346 351Right-handed alpha
Helix 16
AB7
A
360 364Right-handed 310
Helix 17
AB8
A
381 388Right-handed alpha
Helix 18
AB9
A
389 397Right-handed 310
Helix 19
AC1
A
410 427Right-handed alpha
Helix 20
AC2
A
444 463Right-handed alpha
Helix 21
AC3
A
475 483Right-handed alpha
Helix 22
AC4
A
488 492Right-handed 310
Helix 23
AC5
A
508 513Right-handed alpha
Helix 24
AC6
A
514 516Right-handed 310
Helix 25
AC7
A
520 527Right-handed 310
Helix 26
AC8
A
533 540Right-handed alpha
Helix 27
AC9
A
541 554Right-handed alpha
Helix 28
AD1
A
558 577Right-handed alpha
Helix 29
AD2
A
624 649Right-handed alpha
Helix 30
AD3
A
650 654Right-handed 310
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There are 9 sheets in PDB entry 8QLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 40first strand
Strand 2
A
247 252parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
218 224anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
77 79anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 87first strand
Strand 2
A
93 98anti-parallel
Strand 3
A
168 172anti-parallel
Strand 4
A
161 165anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
111 114anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 295first strand
Strand 2
A
589 590anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 501first strand
Strand 2
A
298 307anti-parallel
Strand 3
A
579 586anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
379 380anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 441first strand
Strand 2
A
467 474parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 595first strand
Strand 2
A
617 618anti-parallel
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