Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QLJ entry

There are 2 chains in PDB entry 8QLJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32LYS 652
B
 UNK 1UNK 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8QLJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 61Right-handed alpha
Helix 2
AA2
A
116 129Right-handed alpha
Helix 3
AA3
A
133 137Right-handed 310
Helix 4
AA4
A
143 149Right-handed alpha
Helix 5
AA5
A
154 158Right-handed 310
Helix 6
AA6
A
178 183Right-handed alpha
Helix 7
AA7
A
184 189Right-handed 310
Helix 8
AA8
A
192 200Right-handed alpha
Helix 9
AA9
A
201 203Right-handed 310
Helix 10
AB1
A
207 211Right-handed 310
Helix 11
AB2
A
238 242Right-handed 310
Helix 12
AB3
A
258 266Right-handed alpha
Helix 13
AB4
A
280 288Right-handed alpha
Helix 14
AB5
A
320 332Right-handed alpha
Helix 15
AB6
A
333 344Right-handed alpha
Helix 16
AB7
A
345 359Right-handed alpha
Helix 17
AB8
A
360 363Right-handed 310
Helix 18
AB9
A
380 388Right-handed alpha
Helix 19
AC1
A
389 391Right-handed 310
Helix 20
AC2
A
392 396Right-handed 310
Helix 21
AC3
A
409 426Right-handed alpha
Helix 22
AC4
A
443 462Right-handed alpha
Helix 23
AC5
A
474 481Right-handed alpha
Helix 24
AC6
A
487 491Right-handed 310
Helix 25
AC7
A
507 512Right-handed alpha
Helix 26
AC8
A
513 515Right-handed 310
Helix 27
AC9
A
521 526Right-handed 310
Helix 28
AD1
A
533 539Right-handed alpha
Helix 29
AD2
A
540 553Right-handed alpha
Helix 30
AD3
A
556 575Right-handed alpha
Helix 31
AD4
A
621 648Right-handed alpha
Helix 32
AD5
A
649 651Right-handed 310
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There are 8 sheets in PDB entry 8QLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
246 251parallel
Strand 3
A
227 232anti-parallel
Strand 4
A
217 223anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
76 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 86first strand
Strand 2
A
92 97anti-parallel
Strand 3
A
167 171anti-parallel
Strand 4
A
160 164anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
110 113anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
587 590anti-parallel
Strand 3
A
293 294anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 582first strand
Strand 2
A
301 306anti-parallel
Strand 3
A
495 500anti-parallel
Strand 4
B
2 3anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
378 379anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 440first strand
Strand 2
A
466 473parallel
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