Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QLM entry

There are 4 chains in PDB entry 8QLM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 32	LYS 652
B	SER 32	LYS 652
C	PRO 1	VAL 11
D	PRO 1	VAL 3

There are 62 helices in PDB entry 8QLM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	53	61	Right-handed alpha
Helix 2	AA2	A	116	129	Right-handed alpha
Helix 3	AA3	A	133	137	Right-handed 310
Helix 4	AA4	A	143	149	Right-handed alpha
Helix 5	AA5	A	154	158	Right-handed 310
Helix 6	AA6	A	178	183	Right-handed alpha
Helix 7	AA7	A	184	189	Right-handed 310
Helix 8	AA8	A	192	200	Right-handed alpha
Helix 9	AA9	A	201	203	Right-handed 310
Helix 10	AB1	A	207	211	Right-handed 310
Helix 11	AB2	A	238	242	Right-handed 310
Helix 12	AB3	A	258	266	Right-handed alpha
Helix 13	AB4	A	280	288	Right-handed alpha
Helix 14	AB5	A	320	331	Right-handed alpha
Helix 15	AB6	A	333	344	Right-handed alpha
Helix 16	AB7	A	345	359	Right-handed alpha
Helix 17	AB8	A	360	363	Right-handed 310
Helix 18	AB9	A	380	389	Right-handed alpha
Helix 19	AC1	A	390	396	Right-handed 310
Helix 20	AC2	A	409	426	Right-handed alpha
Helix 21	AC3	A	443	462	Right-handed alpha
Helix 22	AC4	A	474	482	Right-handed alpha
Helix 23	AC5	A	487	491	Right-handed 310
Helix 24	AC6	A	507	512	Right-handed alpha
Helix 25	AC7	A	513	515	Right-handed 310
Helix 26	AC8	A	522	526	Right-handed 310
Helix 27	AC9	A	533	539	Right-handed alpha
Helix 28	AD1	A	540	553	Right-handed alpha
Helix 29	AD2	A	556	575	Right-handed alpha
Helix 30	AD3	A	621	648	Right-handed alpha
Helix 31	AD4	A	649	651	Right-handed 310
Helix 32	AD5	B	53	61	Right-handed alpha
Helix 33	AD6	B	116	129	Right-handed alpha
Helix 34	AD7	B	133	137	Right-handed 310
Helix 35	AD8	B	143	149	Right-handed alpha
Helix 36	AD9	B	154	158	Right-handed 310
Helix 37	AE1	B	178	183	Right-handed alpha
Helix 38	AE2	B	184	189	Right-handed 310
Helix 39	AE3	B	192	200	Right-handed alpha
Helix 40	AE4	B	201	203	Right-handed 310
Helix 41	AE5	B	207	211	Right-handed 310
Helix 42	AE6	B	238	242	Right-handed 310
Helix 43	AE7	B	258	266	Right-handed alpha
Helix 44	AE8	B	280	288	Right-handed alpha
Helix 45	AE9	B	320	332	Right-handed alpha
Helix 46	AF1	B	333	344	Right-handed alpha
Helix 47	AF2	B	345	355	Right-handed alpha
Helix 48	AF3	B	358	363	Right-handed 310
Helix 49	AF4	B	380	388	Right-handed alpha
Helix 50	AF5	B	389	396	Right-handed 310
Helix 51	AF6	B	409	426	Right-handed alpha
Helix 52	AF7	B	443	461	Right-handed alpha
Helix 53	AF8	B	474	482	Right-handed alpha
Helix 54	AF9	B	487	491	Right-handed 310
Helix 55	AG1	B	507	512	Right-handed alpha
Helix 56	AG2	B	513	515	Right-handed 310
Helix 57	AG3	B	522	526	Right-handed 310
Helix 58	AG4	B	533	539	Right-handed alpha
Helix 59	AG5	B	540	553	Right-handed alpha
Helix 60	AG6	B	556	575	Right-handed alpha
Helix 61	AG7	B	621	647	Right-handed alpha
Helix 62	AG8	B	648	651	Right-handed 310

There are 16 sheets in PDB entry 8QLM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	39	first strand
Strand 2	A	246	251	parallel
Strand 3	A	227	232	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	70	first strand
Strand 2	A	76	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	86	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	167	171	anti-parallel
Strand 4	A	160	164	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	110	113	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	587	590	anti-parallel
Strand 3	A	293	294	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	582	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	495	500	anti-parallel
Strand 4	C	2	3	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	378	379	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	440	first strand
Strand 2	A	466	473	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	39	first strand
Strand 2	B	246	251	parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	76	78	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	86	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	167	171	anti-parallel
Strand 4	B	160	164	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	110	113	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	587	590	anti-parallel
Strand 3	B	293	294	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	582	first strand
Strand 2	B	301	306	anti-parallel
Strand 3	B	495	500	anti-parallel
Strand 4	D	2	3	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	378	379	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	440	first strand
Strand 2	B	466	473	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QLM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLM