Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QLO entry

There are 2 chains in PDB entry 8QLO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 1	ILE 507
A	ASN 0	LEU 436

There are 34 helices in PDB entry 8QLO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	15	17	Right-handed 310
Helix 2	AA2	B	22	30	Right-handed alpha
Helix 3	AA3	B	46	60	Right-handed alpha
Helix 4	AA4	B	77	82	Right-handed alpha
Helix 5	AA5	B	97	106	Right-handed alpha
Helix 6	AA6	B	109	132	Right-handed alpha
Helix 7	AA7	B	144	151	Right-handed alpha
Helix 8	AA8	B	205	216	Right-handed alpha
Helix 9	AA9	B	226	230	Right-handed alpha
Helix 10	AB1	B	248	264	Right-handed alpha
Helix 11	AB2	B	331	351	Right-handed alpha
Helix 12	AB3	B	366	377	Right-handed alpha
Helix 13	AB4	B	451	465	Right-handed alpha
Helix 14	AB5	B	477	482	Right-handed alpha
Helix 15	AB6	B	482	493	Right-handed alpha
Helix 16	AB7	B	504	506	Right-handed 310
Helix 17	AB8	A	14	28	Right-handed alpha
Helix 18	AB9	A	44	56	Right-handed alpha
Helix 19	AC1	A	65	71	Right-handed alpha
Helix 20	AC2	A	71	89	Right-handed alpha
Helix 21	AC3	A	104	108	Right-handed 310
Helix 22	AC4	A	109	113	Right-handed 310
Helix 23	AC5	A	123	138	Right-handed alpha
Helix 24	AC6	A	146	159	Right-handed alpha
Helix 25	AC7	A	190	194	Right-handed 310
Helix 26	AC8	A	222	226	Right-handed 310
Helix 27	AC9	A	227	233	Right-handed 310
Helix 28	AD1	A	234	238	Right-handed 310
Helix 29	AD2	A	243	248	Right-handed alpha
Helix 30	AD3	A	257	280	Right-handed alpha
Helix 31	AD4	A	300	302	Right-handed 310
Helix 32	AD5	A	353	368	Right-handed alpha
Helix 33	AD6	A	369	385	Right-handed alpha
Helix 34	AD7	A	423	436	Right-handed alpha

There are 12 sheets in PDB entry 8QLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	A	410	412	parallel
Strand 3	A	169	173	anti-parallel
Strand 4	B	396	398	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	409	414	anti-parallel
Strand 3	B	417	420	anti-parallel
Strand 4	B	441	447	anti-parallel
Strand 5	B	382	389	anti-parallel
Strand 6	B	356	360	parallel
Strand 7	B	278	282	parallel
Strand 8	B	300	304	anti-parallel
Strand 9	B	311	314	anti-parallel
Strand 10	B	501	502	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	12	13	anti-parallel
Strand 3	B	270	271	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	95	first strand
Strand 2	B	41	45	parallel
Strand 3	B	138	143	parallel
Strand 4	B	221	225	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	296	298	anti-parallel
Strand 3	B	318	319	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	327	328	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	B	431	432	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	4	8	parallel
Strand 3	A	60	64	parallel
Strand 4	A	94	98	parallel
Strand 5	A	118	119	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	311	314	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	292	294	anti-parallel
Strand 3	A	317	328	anti-parallel
Strand 4	A	334	344	anti-parallel
Strand 5	A	175	180	anti-parallel
Strand 6	A	400	407	anti-parallel
Strand 7	A	390	394	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	213	216	anti-parallel
Strand 3	A	184	188	anti-parallel
Strand 4	A	239	242	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	308	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QLO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLO