Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QLP entry

There are 16 chains in PDB entry 8QLP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	MET 418
B	MET 1	ILE 507
C	U 1	U 21
D	A 1	C 20
E	ALA 1	PRO 419
F	MET 1	ILE 507
G	U 1	U 21
H	A 1	C 20
I	ALA 1	ASN 417
J	MET 1	ILE 507
K	U 1	U 21
L	A 1	C 20
M	ALA 1	MET 418
N	MET 1	ILE 507
O	U 1	U 21
P	A 1	C 20

There are124 helices in PDB entry 8QLP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	28	Right-handed alpha
Helix 2	AA2	A	46	56	Right-handed alpha
Helix 3	AA3	A	71	88	Right-handed alpha
Helix 4	AA4	A	109	114	Right-handed alpha
Helix 5	AA5	A	123	138	Right-handed alpha
Helix 6	AA6	A	148	158	Right-handed alpha
Helix 7	AA7	A	199	203	Right-handed 310
Helix 8	AA8	A	219	223	Right-handed 310
Helix 9	AA9	A	243	248	Right-handed alpha
Helix 10	AB1	A	257	281	Right-handed alpha
Helix 11	AB2	A	300	302	Right-handed 310
Helix 12	AB3	A	353	368	Right-handed alpha
Helix 13	AB4	A	369	385	Right-handed alpha
Helix 14	AB5	B	15	17	Right-handed 310
Helix 15	AB6	B	22	30	Right-handed alpha
Helix 16	AB7	B	46	62	Right-handed alpha
Helix 17	AB8	B	77	83	Right-handed alpha
Helix 18	AB9	B	97	106	Right-handed alpha
Helix 19	AC1	B	109	132	Right-handed alpha
Helix 20	AC2	B	144	151	Right-handed alpha
Helix 21	AC3	B	205	214	Right-handed alpha
Helix 22	AC4	B	226	230	Right-handed alpha
Helix 23	AC5	B	231	234	Right-handed 310
Helix 24	AC6	B	245	247	Right-handed 310
Helix 25	AC7	B	248	264	Right-handed alpha
Helix 26	AC8	B	331	351	Right-handed alpha
Helix 27	AC9	B	366	377	Right-handed alpha
Helix 28	AD1	B	451	463	Right-handed alpha
Helix 29	AD2	B	477	491	Right-handed alpha
Helix 30	AD3	B	502	506	Right-handed 310
Helix 31	AD4	E	14	29	Right-handed alpha
Helix 32	AD5	E	44	56	Right-handed alpha
Helix 33	AD6	E	71	88	Right-handed alpha
Helix 34	AD7	E	109	114	Right-handed alpha
Helix 35	AD8	E	123	138	Right-handed alpha
Helix 36	AD9	E	146	159	Right-handed alpha
Helix 37	AE1	E	189	194	Right-handed 310
Helix 38	AE2	E	199	203	Right-handed 310
Helix 39	AE3	E	219	223	Right-handed 310
Helix 40	AE4	E	234	238	Right-handed 310
Helix 41	AE5	E	243	248	Right-handed alpha
Helix 42	AE6	E	257	281	Right-handed alpha
Helix 43	AE7	E	300	304	Right-handed 310
Helix 44	AE8	E	353	366	Right-handed alpha
Helix 45	AE9	E	369	384	Right-handed alpha
Helix 46	AF1	F	15	17	Right-handed 310
Helix 47	AF2	F	22	31	Right-handed alpha
Helix 48	AF3	F	46	60	Right-handed alpha
Helix 49	AF4	F	77	83	Right-handed alpha
Helix 50	AF5	F	97	106	Right-handed alpha
Helix 51	AF6	F	109	128	Right-handed alpha
Helix 52	AF7	F	144	151	Right-handed alpha
Helix 53	AF8	F	205	214	Right-handed alpha
Helix 54	AF9	F	226	230	Right-handed alpha
Helix 55	AG1	F	231	234	Right-handed 310
Helix 56	AG2	F	245	247	Right-handed 310
Helix 57	AG3	F	248	264	Right-handed alpha
Helix 58	AG4	F	331	351	Right-handed alpha
Helix 59	AG5	F	366	377	Right-handed alpha
Helix 60	AG6	F	451	462	Right-handed alpha
Helix 61	AG7	F	463	465	Right-handed 310
Helix 62	AG8	F	477	491	Right-handed alpha
Helix 63	AG9	F	502	506	Right-handed 310
Helix 64	AH1	I	14	28	Right-handed alpha
Helix 65	AH2	I	34	39	Right-handed alpha
Helix 66	AH3	I	45	55	Right-handed alpha
Helix 67	AH4	I	71	89	Right-handed alpha
Helix 68	AH5	I	109	114	Right-handed alpha
Helix 69	AH6	I	123	138	Right-handed alpha
Helix 70	AH7	I	148	158	Right-handed alpha
Helix 71	AH8	I	243	248	Right-handed alpha
Helix 72	AH9	I	257	280	Right-handed alpha
Helix 73	AI1	I	300	302	Right-handed 310
Helix 74	AI2	I	353	368	Right-handed alpha
Helix 75	AI3	I	369	385	Right-handed alpha
Helix 76	AI4	J	15	17	Right-handed 310
Helix 77	AI5	J	22	30	Right-handed alpha
Helix 78	AI6	J	46	62	Right-handed alpha
Helix 79	AI7	J	77	83	Right-handed alpha
Helix 80	AI8	J	97	106	Right-handed alpha
Helix 81	AI9	J	109	132	Right-handed alpha
Helix 82	AJ1	J	144	151	Right-handed alpha
Helix 83	AJ2	J	205	214	Right-handed alpha
Helix 84	AJ3	J	226	230	Right-handed alpha
Helix 85	AJ4	J	231	234	Right-handed 310
Helix 86	AJ5	J	245	247	Right-handed 310
Helix 87	AJ6	J	248	264	Right-handed alpha
Helix 88	AJ7	J	331	351	Right-handed alpha
Helix 89	AJ8	J	366	377	Right-handed alpha
Helix 90	AJ9	J	451	463	Right-handed alpha
Helix 91	AK1	J	477	491	Right-handed alpha
Helix 92	AK2	J	502	506	Right-handed 310
Helix 93	AK3	M	14	29	Right-handed alpha
Helix 94	AK4	M	44	56	Right-handed alpha
Helix 95	AK5	M	71	88	Right-handed alpha
Helix 96	AK6	M	109	114	Right-handed alpha
Helix 97	AK7	M	123	138	Right-handed alpha
Helix 98	AK8	M	146	159	Right-handed alpha
Helix 99	AK9	M	189	194	Right-handed 310
Helix 100	AL1	M	199	203	Right-handed 310
Helix 101	AL2	M	234	238	Right-handed 310
Helix 102	AL3	M	243	248	Right-handed alpha
Helix 103	AL4	M	257	281	Right-handed alpha
Helix 104	AL5	M	300	304	Right-handed 310
Helix 105	AL6	M	353	368	Right-handed alpha
Helix 106	AL7	M	369	384	Right-handed alpha
Helix 107	AL8	N	15	17	Right-handed 310
Helix 108	AL9	N	22	31	Right-handed alpha
Helix 109	AM1	N	46	60	Right-handed alpha
Helix 110	AM2	N	77	83	Right-handed alpha
Helix 111	AM3	N	97	106	Right-handed alpha
Helix 112	AM4	N	109	129	Right-handed alpha
Helix 113	AM5	N	144	151	Right-handed alpha
Helix 114	AM6	N	205	214	Right-handed alpha
Helix 115	AM7	N	226	230	Right-handed alpha
Helix 116	AM8	N	231	234	Right-handed 310
Helix 117	AM9	N	245	247	Right-handed 310
Helix 118	AN1	N	248	264	Right-handed alpha
Helix 119	AN2	N	331	351	Right-handed alpha
Helix 120	AN3	N	366	377	Right-handed alpha
Helix 121	AN4	N	451	462	Right-handed alpha
Helix 122	AN5	N	463	465	Right-handed 310
Helix 123	AN6	N	477	491	Right-handed alpha
Helix 124	AN7	N	502	506	Right-handed 310

There are 41 sheets in PDB entry 8QLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	33	first strand
Strand 2	A	4	8	parallel
Strand 3	A	57	64	parallel
Strand 4	A	94	98	parallel
Strand 5	A	118	119	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	315	first strand
Strand 2	B	295	305	anti-parallel
Strand 3	B	321	323	anti-parallel

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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	315	first strand
Strand 2	B	295	305	anti-parallel
Strand 3	B	280	288	anti-parallel
Strand 4	B	356	361	parallel
Strand 5	B	382	389	parallel
Strand 6	B	441	447	anti-parallel
Strand 7	B	417	420	anti-parallel
Strand 8	B	409	414	anti-parallel
Strand 9	B	2	6	anti-parallel
Strand 10	A	409	412	parallel
Strand 11	A	169	172	anti-parallel
Strand 12	B	397	398	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	286	first strand
Strand 2	A	291	294	anti-parallel
Strand 3	A	318	328	anti-parallel
Strand 4	A	334	344	anti-parallel
Strand 5	A	175	180	anti-parallel
Strand 6	A	400	404	anti-parallel
Strand 7	A	390	394	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	184	188	anti-parallel
Strand 3	A	238	242	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	305	first strand
Strand 2	A	308	309	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	12	13	anti-parallel
Strand 3	B	270	271	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	92	95	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	221	225	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	4	8	parallel
Strand 3	E	57	64	parallel
Strand 4	E	94	98	parallel
Strand 5	E	118	119	parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	314	315	first strand
Strand 2	F	295	303	anti-parallel
Strand 3	F	278	288	anti-parallel
Strand 4	F	356	361	parallel
Strand 5	F	382	389	parallel
Strand 6	F	441	447	anti-parallel
Strand 7	F	417	420	anti-parallel
Strand 8	F	409	414	anti-parallel
Strand 9	F	2	6	anti-parallel
Strand 10	E	409	412	parallel
Strand 11	E	169	172	anti-parallel
Strand 12	F	397	398	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	334	336	anti-parallel
Strand 3	E	326	328	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	210	first strand
Strand 2	E	213	216	anti-parallel
Strand 3	E	184	188	anti-parallel
Strand 4	E	239	242	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	286	first strand
Strand 2	E	291	294	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	318	322	first strand
Strand 2	E	340	344	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	390	391	first strand
Strand 2	E	403	404	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	12	13	anti-parallel
Strand 3	F	270	271	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	39	first strand
Strand 2	F	85	86	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	95	first strand
Strand 2	F	41	45	parallel
Strand 3	F	138	143	parallel
Strand 4	F	221	225	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	8	first strand
Strand 2	I	57	64	parallel
Strand 3	I	97	98	parallel
Strand 4	I	118	119	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	311	315	first strand
Strand 2	J	295	305	anti-parallel
Strand 3	J	321	322	anti-parallel

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There are 12 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	311	315	first strand
Strand 2	J	295	305	anti-parallel
Strand 3	J	279	288	anti-parallel
Strand 4	J	356	361	parallel
Strand 5	J	382	389	parallel
Strand 6	J	441	447	anti-parallel
Strand 7	J	417	420	anti-parallel
Strand 8	J	409	414	anti-parallel
Strand 9	J	2	6	anti-parallel
Strand 10	I	409	412	parallel
Strand 11	I	169	172	anti-parallel
Strand 12	J	397	398	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	178	180	first strand
Strand 2	I	400	404	anti-parallel
Strand 3	I	390	394	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	207	210	first strand
Strand 2	I	213	216	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	239	242	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	285	286	first strand
Strand 2	I	291	292	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	304	305	first strand
Strand 2	I	308	309	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	318	328	first strand
Strand 2	I	334	344	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	19	20	first strand
Strand 2	J	12	13	anti-parallel
Strand 3	J	270	271	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	45	first strand
Strand 2	J	92	95	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	139	143	first strand
Strand 2	J	221	225	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	32	34	first strand
Strand 2	M	4	8	parallel
Strand 3	M	57	64	parallel
Strand 4	M	94	98	parallel
Strand 5	M	118	119	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	311	315	first strand
Strand 2	N	295	305	anti-parallel
Strand 3	N	321	322	anti-parallel

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There are 12 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	311	315	first strand
Strand 2	N	295	305	anti-parallel
Strand 3	N	278	288	anti-parallel
Strand 4	N	356	361	parallel
Strand 5	N	382	389	parallel
Strand 6	N	441	447	anti-parallel
Strand 7	N	417	420	anti-parallel
Strand 8	N	409	414	anti-parallel
Strand 9	N	2	6	anti-parallel
Strand 10	M	409	412	parallel
Strand 11	M	169	172	anti-parallel
Strand 12	N	397	398	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	175	177	first strand
Strand 2	M	334	336	anti-parallel
Strand 3	M	326	328	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	207	210	first strand
Strand 2	M	213	216	anti-parallel
Strand 3	M	184	188	anti-parallel
Strand 4	M	239	242	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	283	286	first strand
Strand 2	M	291	294	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	311	313	first strand
Strand 2	M	318	323	anti-parallel
Strand 3	M	339	344	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	390	391	first strand
Strand 2	M	403	404	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	20	first strand
Strand 2	N	12	13	anti-parallel
Strand 3	N	270	271	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	38	39	first strand
Strand 2	N	85	86	parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	94	95	first strand
Strand 2	N	41	45	parallel
Strand 3	N	138	143	parallel
Strand 4	N	221	225	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QLP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QLP