Analysis of interatomic Contacts of Structural Units in PDB entry:
8QM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QM0 entry

There are 3 chains in PDB entry 8QM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	LYS 659
B	ALA 33	LYS 659
C	ALA 33	TYR 41

There are124 helices in PDB entry 8QM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	63	Right-handed alpha
Helix 2	AA2	A	117	131	Right-handed alpha
Helix 3	AA3	A	135	139	Right-handed 310
Helix 4	AA4	A	145	151	Right-handed alpha
Helix 5	AA5	A	156	160	Right-handed 310
Helix 6	AA6	A	180	185	Right-handed alpha
Helix 7	AA7	A	186	191	Right-handed 310
Helix 8	AA8	A	194	202	Right-handed alpha
Helix 9	AA9	A	203	205	Right-handed 310
Helix 10	AB1	A	210	214	Right-handed 310
Helix 11	AB2	A	241	245	Right-handed 310
Helix 12	AB3	A	261	269	Right-handed alpha
Helix 13	AB4	A	283	291	Right-handed alpha
Helix 14	AB5	A	323	335	Right-handed alpha
Helix 15	AB6	A	336	347	Right-handed alpha
Helix 16	AB7	A	348	362	Right-handed alpha
Helix 17	AB8	A	363	366	Right-handed 310
Helix 18	AB9	A	383	391	Right-handed alpha
Helix 19	AC1	A	392	399	Right-handed 310
Helix 20	AC2	A	412	429	Right-handed alpha
Helix 21	AC3	A	446	465	Right-handed alpha
Helix 22	AC4	A	477	485	Right-handed alpha
Helix 23	AC5	A	490	494	Right-handed 310
Helix 24	AC6	A	511	516	Right-handed alpha
Helix 25	AC7	A	517	519	Right-handed 310
Helix 26	AC8	A	522	531	Right-handed alpha
Helix 27	AC9	A	537	543	Right-handed alpha
Helix 28	AD1	A	544	557	Right-handed alpha
Helix 29	AD2	A	561	580	Right-handed alpha
Helix 30	AD3	A	628	653	Right-handed alpha
Helix 31	AD4	A	654	658	Right-handed 310
Helix 32	AD5	B	55	63	Right-handed alpha
Helix 33	AD6	B	117	131	Right-handed alpha
Helix 34	AD7	B	135	139	Right-handed 310
Helix 35	AD8	B	145	152	Right-handed alpha
Helix 36	AD9	B	156	160	Right-handed 310
Helix 37	AE1	B	180	185	Right-handed alpha
Helix 38	AE2	B	186	191	Right-handed 310
Helix 39	AE3	B	194	202	Right-handed alpha
Helix 40	AE4	B	203	205	Right-handed 310
Helix 41	AE5	B	210	214	Right-handed 310
Helix 42	AE6	B	241	245	Right-handed 310
Helix 43	AE7	B	261	269	Right-handed alpha
Helix 44	AE8	B	283	291	Right-handed alpha
Helix 45	AE9	B	323	335	Right-handed alpha
Helix 46	AF1	B	336	347	Right-handed alpha
Helix 47	AF2	B	348	362	Right-handed alpha
Helix 48	AF3	B	363	366	Right-handed 310
Helix 49	AF4	B	383	391	Right-handed alpha
Helix 50	AF5	B	392	399	Right-handed 310
Helix 51	AF6	B	412	430	Right-handed alpha
Helix 52	AF7	B	446	465	Right-handed alpha
Helix 53	AF8	B	477	485	Right-handed alpha
Helix 54	AF9	B	490	494	Right-handed 310
Helix 55	AG1	B	511	516	Right-handed alpha
Helix 56	AG2	B	517	519	Right-handed 310
Helix 57	AG3	B	522	531	Right-handed alpha
Helix 58	AG4	B	537	543	Right-handed alpha
Helix 59	AG5	B	544	557	Right-handed alpha
Helix 60	AG6	B	561	580	Right-handed alpha
Helix 61	AG7	B	628	653	Right-handed alpha
Helix 62	AG8	B	654	658	Right-handed 310
Helix 63	AG9	C	55	63	Right-handed alpha
Helix 64	AH1	C	118	131	Right-handed alpha
Helix 65	AH2	C	135	139	Right-handed 310
Helix 66	AH3	C	145	151	Right-handed alpha
Helix 67	AH4	C	156	160	Right-handed 310
Helix 68	AH5	C	180	185	Right-handed alpha
Helix 69	AH6	C	186	191	Right-handed 310
Helix 70	AH7	C	194	202	Right-handed alpha
Helix 71	AH8	C	203	205	Right-handed 310
Helix 72	AH9	C	210	214	Right-handed 310
Helix 73	AI1	C	241	245	Right-handed 310
Helix 74	AI2	C	261	269	Right-handed alpha
Helix 75	AI3	C	283	291	Right-handed alpha
Helix 76	AI4	C	323	336	Right-handed alpha
Helix 77	AI5	C	336	347	Right-handed alpha
Helix 78	AI6	C	348	362	Right-handed alpha
Helix 79	AI7	C	363	366	Right-handed 310
Helix 80	AI8	C	383	391	Right-handed alpha
Helix 81	AI9	C	392	399	Right-handed 310
Helix 82	AJ1	C	412	430	Right-handed alpha
Helix 83	AJ2	C	446	465	Right-handed alpha
Helix 84	AJ3	C	477	483	Right-handed alpha
Helix 85	AJ4	C	490	494	Right-handed 310
Helix 86	AJ5	C	511	516	Right-handed alpha
Helix 87	AJ6	C	517	519	Right-handed 310
Helix 88	AJ7	C	522	531	Right-handed alpha
Helix 89	AJ8	C	537	543	Right-handed alpha
Helix 90	AJ9	C	544	557	Right-handed alpha
Helix 91	AK1	C	561	580	Right-handed alpha
Helix 92	AK2	C	628	653	Right-handed alpha
Helix 93	AK3	C	654	658	Right-handed 310
Helix 94	AK4	D	55	63	Right-handed alpha
Helix 95	AK5	D	117	131	Right-handed alpha
Helix 96	AK6	D	135	139	Right-handed 310
Helix 97	AK7	D	145	151	Right-handed alpha
Helix 98	AK8	D	156	160	Right-handed 310
Helix 99	AK9	D	180	185	Right-handed alpha
Helix 100	AL1	D	186	191	Right-handed 310
Helix 101	AL2	D	194	202	Right-handed alpha
Helix 102	AL3	D	203	205	Right-handed 310
Helix 103	AL4	D	210	214	Right-handed 310
Helix 104	AL5	D	241	245	Right-handed 310
Helix 105	AL6	D	261	269	Right-handed alpha
Helix 106	AL7	D	283	291	Right-handed alpha
Helix 107	AL8	D	323	335	Right-handed alpha
Helix 108	AL9	D	336	347	Right-handed alpha
Helix 109	AM1	D	348	362	Right-handed alpha
Helix 110	AM2	D	363	366	Right-handed 310
Helix 111	AM3	D	383	391	Right-handed alpha
Helix 112	AM4	D	392	399	Right-handed 310
Helix 113	AM5	D	412	430	Right-handed alpha
Helix 114	AM6	D	446	465	Right-handed alpha
Helix 115	AM7	D	477	485	Right-handed alpha
Helix 116	AM8	D	490	494	Right-handed 310
Helix 117	AM9	D	511	516	Right-handed alpha
Helix 118	AN1	D	517	519	Right-handed 310
Helix 119	AN2	D	522	531	Right-handed alpha
Helix 120	AN3	D	537	543	Right-handed alpha
Helix 121	AN4	D	544	558	Right-handed alpha
Helix 122	AN5	D	561	580	Right-handed alpha
Helix 123	AN6	D	628	654	Right-handed alpha
Helix 124	AN7	D	655	658	Right-handed 310

There are 36 sheets in PDB entry 8QM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	41	first strand
Strand 2	A	249	254	parallel
Strand 3	A	230	235	anti-parallel
Strand 4	A	220	226	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	78	80	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	88	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	169	173	anti-parallel
Strand 4	A	162	166	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	112	115	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	593	596	anti-parallel
Strand 3	A	296	297	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	304	309	anti-parallel
Strand 3	A	582	587	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	381	382	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	443	first strand
Strand 2	A	469	476	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	504	first strand
Strand 2	E	2	4	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	249	254	parallel
Strand 3	B	230	235	anti-parallel
Strand 4	B	220	226	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	78	80	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	88	first strand
Strand 2	B	94	99	anti-parallel
Strand 3	B	169	173	anti-parallel
Strand 4	B	162	166	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	112	115	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	593	596	anti-parallel
Strand 3	B	296	297	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	304	309	anti-parallel
Strand 3	B	582	587	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	378	first strand
Strand 2	B	381	382	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	443	first strand
Strand 2	B	469	476	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	504	first strand
Strand 2	F	2	4	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	41	first strand
Strand 2	C	249	254	parallel
Strand 3	C	230	235	anti-parallel
Strand 4	C	220	226	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	78	80	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	88	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	169	173	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	106	first strand
Strand 2	C	112	115	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	593	596	anti-parallel
Strand 3	C	296	297	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	304	309	anti-parallel
Strand 3	C	582	587	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	381	382	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	436	443	first strand
Strand 2	C	469	476	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	502	504	first strand
Strand 2	G	2	4	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	41	first strand
Strand 2	D	249	254	parallel
Strand 3	D	230	235	anti-parallel
Strand 4	D	220	226	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	78	80	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	88	first strand
Strand 2	D	94	99	anti-parallel
Strand 3	D	169	173	anti-parallel
Strand 4	D	162	166	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	112	115	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	276	first strand
Strand 2	D	593	596	anti-parallel
Strand 3	D	296	297	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	499	first strand
Strand 2	D	304	309	anti-parallel
Strand 3	D	582	587	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	377	378	first strand
Strand 2	D	381	382	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	443	first strand
Strand 2	D	469	476	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	502	504	first strand
Strand 2	H	2	4	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QM0