Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QMD entry

There are 10 chains in PDB entry 8QMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 THR 51THR 173
D
 THR 51GLY 172
A
 THR 51THR 173
B
 GLN 50THR 173
E
 GLN 50THR 173
F
 GLN 50THR 173
G
 LEU 53THR 173
H
 THR 51THR 173
I
 THR 51THR 173
J
 VAL 52GLU 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8QMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
74 85Right-handed alpha
Helix 2
AA2
C
94 104Right-handed alpha
Helix 3
AA3
D
74 85Right-handed alpha
Helix 4
AA4
D
94 104Right-handed alpha
Helix 5
AA5
A
74 85Right-handed alpha
Helix 6
AA6
A
94 104Right-handed alpha
Helix 7
AA7
B
74 85Right-handed alpha
Helix 8
AA8
B
94 104Right-handed alpha
Helix 9
AA9
E
74 85Right-handed alpha
Helix 10
AB1
E
94 104Right-handed alpha
Helix 11
AB2
F
74 85Right-handed alpha
Helix 12
AB3
F
94 104Right-handed alpha
Helix 13
AB4
G
74 85Right-handed alpha
Helix 14
AB5
G
94 104Right-handed alpha
Helix 15
AB6
H
74 85Right-handed alpha
Helix 16
AB7
H
94 104Right-handed alpha
Helix 17
AB8
I
74 85Right-handed alpha
Helix 18
AB9
I
94 104Right-handed alpha
Helix 19
AC1
J
74 85Right-handed alpha
Helix 20
AC2
J
94 104Right-handed alpha
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There are 20 sheets in PDB entry 8QMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 61first strand
Strand 2
C
64 68anti-parallel
Strand 3
C
166 171anti-parallel
Strand 4
C
111 117parallel
Strand 5
C
124 126anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 89first strand
Strand 2
C
166 171anti-parallel
Strand 3
C
111 117parallel
Strand 4
C
147 152anti-parallel
Strand 5
C
155 160anti-parallel
Strand 6
C
139 140parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 61first strand
Strand 2
D
64 68anti-parallel
Strand 3
D
166 171anti-parallel
Strand 4
D
111 117parallel
Strand 5
D
124 126anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 89first strand
Strand 2
D
166 171anti-parallel
Strand 3
D
111 117parallel
Strand 4
D
147 152anti-parallel
Strand 5
D
155 160anti-parallel
Strand 6
D
139 140parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
166 171anti-parallel
Strand 4
A
111 117parallel
Strand 5
A
124 126anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
166 171anti-parallel
Strand 3
A
111 117parallel
Strand 4
A
147 152anti-parallel
Strand 5
A
155 160anti-parallel
Strand 6
A
139 140parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
64 68anti-parallel
Strand 3
B
166 171anti-parallel
Strand 4
B
111 117parallel
Strand 5
B
124 126anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
166 171anti-parallel
Strand 3
B
111 117parallel
Strand 4
B
147 152anti-parallel
Strand 5
B
155 160anti-parallel
Strand 6
B
139 140parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
59 61first strand
Strand 2
E
64 68anti-parallel
Strand 3
E
166 172anti-parallel
Strand 4
E
111 117parallel
Strand 5
E
124 126anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
88 89first strand
Strand 2
E
166 172anti-parallel
Strand 3
E
111 117parallel
Strand 4
E
147 152anti-parallel
Strand 5
E
155 160anti-parallel
Strand 6
E
139 140parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
59 61first strand
Strand 2
F
64 68anti-parallel
Strand 3
F
166 171anti-parallel
Strand 4
F
111 117parallel
Strand 5
F
124 126anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
88 89first strand
Strand 2
F
166 171anti-parallel
Strand 3
F
111 117parallel
Strand 4
F
147 152anti-parallel
Strand 5
F
155 160anti-parallel
Strand 6
F
139 140parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
59 61first strand
Strand 2
G
64 68anti-parallel
Strand 3
G
166 172anti-parallel
Strand 4
G
111 117parallel
Strand 5
G
124 126anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
88 89first strand
Strand 2
G
166 172anti-parallel
Strand 3
G
111 117parallel
Strand 4
G
147 152anti-parallel
Strand 5
G
155 160anti-parallel
Strand 6
G
139 140parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
59 61first strand
Strand 2
H
64 68anti-parallel
Strand 3
H
166 171anti-parallel
Strand 4
H
111 117parallel
Strand 5
H
124 126anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
88 89first strand
Strand 2
H
166 171anti-parallel
Strand 3
H
111 117parallel
Strand 4
H
147 152anti-parallel
Strand 5
H
155 160anti-parallel
Strand 6
H
139 140parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
59 61first strand
Strand 2
I
64 68anti-parallel
Strand 3
I
166 171anti-parallel
Strand 4
I
111 117parallel
Strand 5
I
124 126anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
88 89first strand
Strand 2
I
166 171anti-parallel
Strand 3
I
111 117parallel
Strand 4
I
147 152anti-parallel
Strand 5
I
155 160anti-parallel
Strand 6
I
139 140parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
59 61first strand
Strand 2
J
64 68anti-parallel
Strand 3
J
166 172anti-parallel
Strand 4
J
111 117parallel
Strand 5
J
124 126anti-parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
88 89first strand
Strand 2
J
166 172anti-parallel
Strand 3
J
111 117parallel
Strand 4
J
147 152anti-parallel
Strand 5
J
155 160anti-parallel
Strand 6
J
139 140parallel
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