Analysis of interatomic Contacts of Structural Units in PDB entry:
8QME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8QME entry

There are 2 chains in PDB entry 8QME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLU 705
B	PRO 2	ILE 574

There are114 helices in PDB entry 8QME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	94	Right-handed 310
Helix 2	AA2	A	130	139	Right-handed alpha
Helix 3	AA3	A	176	178	Right-handed 310
Helix 4	AA4	A	207	213	Right-handed alpha
Helix 5	AA5	A	216	222	Right-handed 310
Helix 6	AA6	A	264	267	Right-handed 310
Helix 7	AA7	A	270	281	Right-handed alpha
Helix 8	AA8	A	281	294	Right-handed alpha
Helix 9	AA9	A	302	319	Right-handed alpha
Helix 10	AB1	A	335	339	Right-handed 310
Helix 11	AB2	A	343	358	Right-handed alpha
Helix 12	AB3	A	359	373	Right-handed alpha
Helix 13	AB4	A	424	444	Right-handed alpha
Helix 14	AB5	A	445	452	Right-handed alpha
Helix 15	AB6	A	452	468	Right-handed alpha
Helix 16	AB7	A	470	474	Right-handed 310
Helix 17	AB8	A	484	486	Right-handed 310
Helix 18	AB9	A	498	503	Right-handed alpha
Helix 19	AC1	A	507	528	Right-handed alpha
Helix 20	AC2	A	530	551	Right-handed alpha
Helix 21	AC3	A	571	576	Right-handed 310
Helix 22	AC4	A	577	583	Right-handed alpha
Helix 23	AC5	A	585	590	Right-handed 310
Helix 24	AC6	A	595	610	Right-handed alpha
Helix 25	AC7	A	633	646	Right-handed alpha
Helix 26	AC8	A	652	667	Right-handed alpha
Helix 27	AC9	A	670	675	Right-handed 310
Helix 28	AD1	A	692	704	Right-handed 310
Helix 29	AD2	B	92	96	Right-handed 310
Helix 30	AD3	B	130	139	Right-handed alpha
Helix 31	AD4	B	176	178	Right-handed 310
Helix 32	AD5	B	207	213	Right-handed alpha
Helix 33	AD6	B	216	222	Right-handed 310
Helix 34	AD7	B	264	267	Right-handed 310
Helix 35	AD8	B	270	281	Right-handed alpha
Helix 36	AD9	B	281	294	Right-handed alpha
Helix 37	AE1	B	295	297	Right-handed 310
Helix 38	AE2	B	302	319	Right-handed alpha
Helix 39	AE3	B	335	339	Right-handed 310
Helix 40	AE4	B	343	358	Right-handed alpha
Helix 41	AE5	B	359	373	Right-handed alpha
Helix 42	AE6	B	424	444	Right-handed alpha
Helix 43	AE7	B	445	452	Right-handed alpha
Helix 44	AE8	B	452	468	Right-handed alpha
Helix 45	AE9	B	470	474	Right-handed 310
Helix 46	AF1	B	484	486	Right-handed 310
Helix 47	AF2	B	498	503	Right-handed alpha
Helix 48	AF3	B	507	528	Right-handed alpha
Helix 49	AF4	B	530	551	Right-handed alpha
Helix 50	AF5	B	571	576	Right-handed 310
Helix 51	AF6	B	577	583	Right-handed alpha
Helix 52	AF7	B	585	590	Right-handed 310
Helix 53	AF8	B	595	610	Right-handed alpha
Helix 54	AF9	B	633	646	Right-handed alpha
Helix 55	AG1	B	652	667	Right-handed alpha
Helix 56	AG2	B	670	675	Right-handed 310
Helix 57	AG3	B	692	704	Right-handed 310
Helix 58	AG4	C	92	94	Right-handed 310
Helix 59	AG5	C	130	139	Right-handed alpha
Helix 60	AG6	C	176	178	Right-handed 310
Helix 61	AG7	C	207	214	Right-handed alpha
Helix 62	AG8	C	216	222	Right-handed 310
Helix 63	AG9	C	264	267	Right-handed 310
Helix 64	AH1	C	270	281	Right-handed alpha
Helix 65	AH2	C	281	294	Right-handed alpha
Helix 66	AH3	C	295	297	Right-handed 310
Helix 67	AH4	C	302	319	Right-handed alpha
Helix 68	AH5	C	335	339	Right-handed 310
Helix 69	AH6	C	343	358	Right-handed alpha
Helix 70	AH7	C	359	373	Right-handed alpha
Helix 71	AH8	C	424	444	Right-handed alpha
Helix 72	AH9	C	445	452	Right-handed alpha
Helix 73	AI1	C	452	468	Right-handed alpha
Helix 74	AI2	C	470	474	Right-handed 310
Helix 75	AI3	C	484	486	Right-handed 310
Helix 76	AI4	C	498	503	Right-handed alpha
Helix 77	AI5	C	507	528	Right-handed alpha
Helix 78	AI6	C	530	551	Right-handed alpha
Helix 79	AI7	C	571	576	Right-handed 310
Helix 80	AI8	C	577	583	Right-handed alpha
Helix 81	AI9	C	585	590	Right-handed 310
Helix 82	AJ1	C	595	610	Right-handed alpha
Helix 83	AJ2	C	633	646	Right-handed alpha
Helix 84	AJ3	C	652	667	Right-handed alpha
Helix 85	AJ4	C	670	675	Right-handed 310
Helix 86	AJ5	C	692	704	Right-handed 310
Helix 87	AJ6	D	92	96	Right-handed 310
Helix 88	AJ7	D	130	139	Right-handed alpha
Helix 89	AJ8	D	176	178	Right-handed 310
Helix 90	AJ9	D	207	213	Right-handed alpha
Helix 91	AK1	D	216	222	Right-handed 310
Helix 92	AK2	D	264	267	Right-handed 310
Helix 93	AK3	D	270	281	Right-handed alpha
Helix 94	AK4	D	281	295	Right-handed alpha
Helix 95	AK5	D	302	319	Right-handed alpha
Helix 96	AK6	D	335	339	Right-handed 310
Helix 97	AK7	D	343	358	Right-handed alpha
Helix 98	AK8	D	359	373	Right-handed alpha
Helix 99	AK9	D	424	444	Right-handed alpha
Helix 100	AL1	D	445	452	Right-handed alpha
Helix 101	AL2	D	452	468	Right-handed alpha
Helix 102	AL3	D	470	474	Right-handed 310
Helix 103	AL4	D	484	486	Right-handed 310
Helix 104	AL5	D	498	503	Right-handed alpha
Helix 105	AL6	D	507	528	Right-handed alpha
Helix 106	AL7	D	530	551	Right-handed alpha
Helix 107	AL8	D	571	576	Right-handed 310
Helix 108	AL9	D	577	583	Right-handed alpha
Helix 109	AM1	D	585	590	Right-handed 310
Helix 110	AM2	D	595	610	Right-handed alpha
Helix 111	AM3	D	633	646	Right-handed alpha
Helix 112	AM4	D	652	667	Right-handed alpha
Helix 113	AM5	D	670	675	Right-handed 310
Helix 114	AM6	D	692	704	Right-handed 310

There are 28 sheets in PDB entry 8QME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	30	33	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	56	58	parallel
Strand 3	A	43	48	anti-parallel
Strand 4	A	157	164	anti-parallel
Strand 5	A	227	234	anti-parallel
Strand 6	A	200	205	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	112	117	anti-parallel
Strand 4	A	141	149	anti-parallel
Strand 5	A	239	248	anti-parallel
Strand 6	A	191	195	anti-parallel
Strand 7	A	183	187	anti-parallel
Strand 8	A	172	174	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	320	325	anti-parallel
Strand 3	A	328	333	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	394	first strand
Strand 2	A	374	380	anti-parallel
Strand 3	A	481	482	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	400	first strand
Strand 2	A	403	404	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	630	632	first strand
Strand 2	A	679	681	anti-parallel
Strand 3	A	684	687	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	30	33	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	56	58	parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	157	164	anti-parallel
Strand 5	B	227	234	anti-parallel
Strand 6	B	200	205	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	100	first strand
Strand 2	B	104	109	anti-parallel
Strand 3	B	112	117	anti-parallel
Strand 4	B	141	149	anti-parallel
Strand 5	B	239	248	anti-parallel
Strand 6	B	191	195	anti-parallel
Strand 7	B	183	187	anti-parallel
Strand 8	B	172	174	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	320	325	anti-parallel
Strand 3	B	328	333	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	394	first strand
Strand 2	B	374	380	anti-parallel
Strand 3	B	481	482	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	399	400	first strand
Strand 2	B	403	404	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	632	first strand
Strand 2	B	679	681	anti-parallel
Strand 3	B	684	687	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	30	33	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	56	58	parallel
Strand 3	C	43	48	anti-parallel
Strand 4	C	157	164	anti-parallel
Strand 5	C	227	234	anti-parallel
Strand 6	C	200	205	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	104	109	anti-parallel
Strand 3	C	112	117	anti-parallel
Strand 4	C	141	149	anti-parallel
Strand 5	C	239	248	anti-parallel
Strand 6	C	191	195	anti-parallel
Strand 7	C	183	187	anti-parallel
Strand 8	C	172	174	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	262	first strand
Strand 2	C	320	325	anti-parallel
Strand 3	C	328	333	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	394	first strand
Strand 2	C	374	380	anti-parallel
Strand 3	C	481	482	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	400	first strand
Strand 2	C	403	404	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	630	632	first strand
Strand 2	C	679	681	anti-parallel
Strand 3	C	684	687	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	21	first strand
Strand 2	D	30	33	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	56	58	parallel
Strand 3	D	43	48	anti-parallel
Strand 4	D	157	164	anti-parallel
Strand 5	D	227	234	anti-parallel
Strand 6	D	200	205	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	100	first strand
Strand 2	D	104	109	anti-parallel
Strand 3	D	112	117	anti-parallel
Strand 4	D	141	150	anti-parallel
Strand 5	D	238	248	anti-parallel
Strand 6	D	191	195	anti-parallel
Strand 7	D	183	187	anti-parallel
Strand 8	D	172	174	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	D	320	325	anti-parallel
Strand 3	D	328	333	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	394	first strand
Strand 2	D	374	380	anti-parallel
Strand 3	D	481	482	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	399	400	first strand
Strand 2	D	403	404	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	630	632	first strand
Strand 2	D	679	681	anti-parallel
Strand 3	D	684	687	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8QME

Analysis of interatomic Contacts of Structural Units in PDB entry:
8QME