Analysis of interatomic Contacts of Structural Units in PDB entry:
8QMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8QMF entry

There are 2 chains in PDB entry 8QMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 678
B
 MET 1HIS 674
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 8QMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 22Right-handed alpha
Helix 2
AA2
A
26 43Right-handed alpha
Helix 3
AA3
A
66 78Right-handed alpha
Helix 4
AA4
A
82 87Right-handed alpha
Helix 5
AA5
A
116 137Right-handed alpha
Helix 6
AA6
A
153 159Right-handed alpha
Helix 7
AA7
A
159 172Right-handed alpha
Helix 8
AA8
A
193 195Right-handed 310
Helix 9
AA9
A
199 207Right-handed alpha
Helix 10
AB1
A
219 233Right-handed alpha
Helix 11
AB2
A
255 259Right-handed 310
Helix 12
AB3
A
264 276Right-handed alpha
Helix 13
AB4
A
285 293Right-handed alpha
Helix 14
AB5
A
294 316Right-handed alpha
Helix 15
AB6
A
316 328Right-handed alpha
Helix 16
AB7
A
334 349Right-handed alpha
Helix 17
AB8
A
355 368Right-handed alpha
Helix 18
AB9
A
380 385Right-handed alpha
Helix 19
AC1
A
409 424Right-handed alpha
Helix 20
AC2
A
435 439Right-handed 310
Helix 21
AC3
A
440 451Right-handed alpha
Helix 22
AC4
A
462 466Right-handed 310
Helix 23
AC5
A
476 483Right-handed alpha
Helix 24
AC6
A
494 508Right-handed alpha
Helix 25
AC7
A
528 535Right-handed alpha
Helix 26
AC8
A
536 538Right-handed 310
Helix 27
AC9
A
559 573Right-handed alpha
Helix 28
AD1
A
584 590Right-handed alpha
Helix 29
AD2
A
592 600Right-handed alpha
Helix 30
AD3
A
618 623Right-handed alpha
Helix 31
AD4
A
639 647Right-handed alpha
Helix 32
AD5
A
650 674Right-handed alpha
Helix 33
AD6
B
2 22Right-handed alpha
Helix 34
AD7
B
26 32Right-handed alpha
Helix 35
AD8
B
32 43Right-handed alpha
Helix 36
AD9
B
66 78Right-handed alpha
Helix 37
AE1
B
82 88Right-handed alpha
Helix 38
AE2
B
116 137Right-handed alpha
Helix 39
AE3
B
153 159Right-handed alpha
Helix 40
AE4
B
159 172Right-handed alpha
Helix 41
AE5
B
193 195Right-handed 310
Helix 42
AE6
B
199 207Right-handed alpha
Helix 43
AE7
B
219 233Right-handed alpha
Helix 44
AE8
B
255 259Right-handed 310
Helix 45
AE9
B
264 276Right-handed alpha
Helix 46
AF1
B
285 293Right-handed alpha
Helix 47
AF2
B
294 316Right-handed alpha
Helix 48
AF3
B
316 328Right-handed alpha
Helix 49
AF4
B
334 349Right-handed alpha
Helix 50
AF5
B
355 368Right-handed alpha
Helix 51
AF6
B
380 385Right-handed alpha
Helix 52
AF7
B
409 424Right-handed alpha
Helix 53
AF8
B
435 439Right-handed 310
Helix 54
AF9
B
440 451Right-handed alpha
Helix 55
AG1
B
462 466Right-handed 310
Helix 56
AG2
B
476 483Right-handed alpha
Helix 57
AG3
B
494 508Right-handed alpha
Helix 58
AG4
B
528 536Right-handed alpha
Helix 59
AG5
B
559 573Right-handed alpha
Helix 60
AG6
B
584 590Right-handed alpha
Helix 61
AG7
B
592 600Right-handed alpha
Helix 62
AG8
B
618 623Right-handed alpha
Helix 63
AG9
B
639 647Right-handed alpha
Helix 64
AH1
B
650 664Right-handed alpha
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There are 10 sheets in PDB entry 8QMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
148 152parallel
Strand 3
A
177 183parallel
Strand 4
A
237 242parallel
Strand 5
A
210 216parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
521 522anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
373 377parallel
Strand 3
A
427 433parallel
Strand 4
A
454 459parallel
Strand 5
A
512 517parallel
Strand 6
A
488 490parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
540 543first strand
Strand 2
A
577 581anti-parallel
Strand 3
A
551 555parallel
Strand 4
A
607 614parallel
Strand 5
A
627 631parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
148 152parallel
Strand 3
B
177 183parallel
Strand 4
B
237 242parallel
Strand 5
B
210 216parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
186 187first strand
Strand 2
B
190 191anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 354first strand
Strand 2
B
521 522anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
403 405first strand
Strand 2
B
373 377parallel
Strand 3
B
427 433parallel
Strand 4
B
454 459parallel
Strand 5
B
512 516parallel
Strand 6
B
488 490parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
540 543first strand
Strand 2
B
577 581anti-parallel
Strand 3
B
551 555parallel
Strand 4
B
607 614parallel
Strand 5
B
627 631parallel
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